Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30488
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   7.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 85  GPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVV 201
           GP K      P+LQ +   V    TT  +P+    S +V
Sbjct: 303 GPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIV 341


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 139 AVKKIQTTVNNPVKPR 186
           A+K +Q T N+PV  R
Sbjct: 351 AIKYVQQTTNSPVDMR 366


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 34  PSESNPPTETKPEQPAA 84
           P E + P ET+P  P+A
Sbjct: 287 PGEVDLPPETQPTPPSA 303


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 77  GCSGFVSVGGFDSD 36
           GCSGFV+  G   D
Sbjct: 418 GCSGFVAFNGDQYD 431


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = -3

Query: 221 CSDLVSSTTSESLGFTGLLTVVWIFLTAPAMP 126
           C   +S T S+       + V+W+     A+P
Sbjct: 157 CHPFISHTMSKLSRAVKFIIVIWLLALCLAVP 188


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 294 CYYPHH 277
           CYYP+H
Sbjct: 388 CYYPYH 393


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 294 CYYPHH 277
           CYYP+H
Sbjct: 388 CYYPYH 393


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 354 VFLLWIP*FLRL 319
           VFL W+P  LR+
Sbjct: 335 VFLYWLPCILRM 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,676
Number of Sequences: 438
Number of extensions: 1604
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)