Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30488
(364 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51120.1 68414.m05747 AP2 domain-containing transcription fac... 31 0.30
At1g72290.1 68414.m08357 trypsin and protease inhibitor family p... 30 0.40
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 0.93
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 0.93
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 0.93
At3g10250.2 68416.m01227 expressed protein 28 1.6
At3g10250.1 68416.m01226 expressed protein 28 1.6
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 1.6
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 28 1.6
At3g24560.3 68416.m03086 expressed protein contains Pfam profil... 28 2.1
At3g24560.2 68416.m03084 expressed protein contains Pfam profil... 28 2.1
At3g24560.1 68416.m03085 expressed protein contains Pfam profil... 28 2.1
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb... 28 2.1
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa... 27 2.8
At4g22320.1 68417.m03227 expressed protein 27 2.8
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 27 2.8
At4g33620.1 68417.m04775 Ulp1 protease family protein low simila... 27 3.7
At3g31540.1 68416.m04025 hypothetical protein 27 3.7
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /... 27 3.7
At5g19610.1 68418.m02334 sec7 domain-containing protein similar ... 27 4.9
At3g04560.1 68416.m00484 expressed protein 27 4.9
At1g79160.1 68414.m09230 expressed protein 27 4.9
At1g55160.1 68414.m06299 expressed protein 27 4.9
At1g49190.1 68414.m05515 two-component responsive regulator fami... 26 6.5
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 26 8.6
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /... 26 8.6
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put... 26 8.6
At1g50680.1 68414.m05699 AP2 domain-containing transcription fac... 26 8.6
At1g20000.1 68414.m02505 transcription initiation factor IID (TF... 26 8.6
>At1g51120.1 68414.m05747 AP2 domain-containing transcription
factor, putative similar to DNA-binding protein RAV1
GI:3868857 from [Arabidopsis thaliana]
Length = 352
Score = 30.7 bits (66), Expect = 0.30
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +1
Query: 190 SEVVEETKSEQEKGGVILLPVQV 258
S+V EETKSE++KGG +L V++
Sbjct: 329 SKVEEETKSEEKKGGFMLFGVRI 351
>At1g72290.1 68414.m08357 trypsin and protease inhibitor family
protein / Kunitz family protein similar to water-soluble
chlorophyll protein [Raphanus sativus var. niger]
GI:16945735, BnD22 drought induced protein [Brassica
napus] GI:17813; contains Pfam profile PF00197: Trypsin
and protease inhibitor
Length = 215
Score = 30.3 bits (65), Expect = 0.40
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 151 IQTTVNNPVKPRDSEVVEETKSEQEKGGVILLPVQVTAVTVEMVGIITT 297
++ T NP+ R+ ++ K+E + GG L+P +T + +GI T
Sbjct: 27 VKDTAGNPLNTREQYFIQPVKTESKNGGG-LVPAAITVLPFCPLGITQT 74
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 0.93
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +1
Query: 19 PDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEV 198
P++ +PS+ P KP+QP+ P E S + + K+ P +S
Sbjct: 427 PNLEEPSKPKPEESPKPQQPSPKPETPSHEPSNPKEPKPESPKQESPKTEQPKPKPESPK 486
Query: 199 VEETKSEQEK 228
E K E K
Sbjct: 487 QESPKQEAPK 496
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 4 VASAAPDIAKPSESN-PPTETKPEQPAAGPLKQIFENSP 117
VAS P +A P + PP T P P A P Q+ +P
Sbjct: 90 VASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAP 128
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 4 VASAAPDIAKPSESN-PPTETKPEQPAAGPLKQIFENSP 117
VAS P +A P + PP T P P A P Q+ +P
Sbjct: 90 VASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAP 128
>At3g10250.2 68416.m01227 expressed protein
Length = 324
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 34 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 174
PS N T + + L N P++QG+ G + K +T NP
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNP 204
>At3g10250.1 68416.m01226 expressed protein
Length = 324
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 34 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 174
PS N T + + L N P++QG+ G + K +T NP
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNP 204
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 4 VASAAPDIA--KPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPV 177
++S + D+ KP+ + P TK E+ P + + SP + GAV K + + V
Sbjct: 33 ISSDSADVVNDKPASDSNPVVTKEEEIDQTPAGEPEKESPAVVEEVGAVVKAEESTET-V 91
Query: 178 KPRDSEVVEETKSEQEKGGVILLPVQVTAVTVEMV 282
K + E E +E IL+ V V VE V
Sbjct: 92 KHENGEKGAEQVELKEP---ILVKETVAEVNVETV 123
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 10 SAAPDIAKPSESNPPTETKPEQPAAGPLKQI 102
SA +AKPSE N PTET Q G L Q+
Sbjct: 1550 SAENSLAKPSEENSPTET--WQDVIGLLNQL 1578
>At3g24560.3 68416.m03086 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 456
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 134 AMPCRTGLFSKICFNGPAAGCSG 66
A+PCRT L + C+ PA G G
Sbjct: 185 AIPCRTSLTAAGCYLSPAPGSKG 207
>At3g24560.2 68416.m03084 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 660
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 134 AMPCRTGLFSKICFNGPAAGCSG 66
A+PCRT L + C+ PA G G
Sbjct: 389 AIPCRTSLTAAGCYLSPAPGSKG 411
>At3g24560.1 68416.m03085 expressed protein contains Pfam profile
PF01171: PP-loop family
Length = 462
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 134 AMPCRTGLFSKICFNGPAAGCSG 66
A+PCRT L + C+ PA G G
Sbjct: 191 AIPCRTSLTAAGCYLSPAPGSKG 213
>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
gb|T22270 and gb|T76886 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 274
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +1
Query: 136 GAVKKIQTTVNNPVKPRDSEVVEETKSE 219
G +K++T+++ P KPR++E + +++SE
Sbjct: 247 GKRRKLKTSIDFPAKPRNTEKLFQSESE 274
>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 1092
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 96 F*WPGC-GLFWFCFSGRI*LRWFRNVWSGTRD 4
F W GC + FCF + WFRN+ + RD
Sbjct: 1006 FAWIGCLSVSLFCFCAKRCHVWFRNLHNSIRD 1037
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 37 SESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVK-PRDSEVVEETK 213
SESN P+E A P ++ F+ P+ + KK T + K D ++ E+ K
Sbjct: 92 SESNSPSEDTVATVAEDPPRRRFKYVPI--AVLEEQKKEITEIEEDDKIEEDDKIDEDNK 149
Query: 214 SEQE 225
EQE
Sbjct: 150 VEQE 153
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 28 AKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 174
AKP+ S PP T P +P+ G K N + + +V+K T N+P
Sbjct: 395 AKPAPSGPPRGTPPAKPSKGKRKL---NDGDSKKPSSSVQKKVKTENDP 440
>At4g33620.1 68417.m04775 Ulp1 protease family protein low
similarity to SP|Q9BQF6 SUMO-1-specific protease 2 (EC
3.4.22.-) (Sentrin-specific protease SENP7) {Homo
sapiens}; contains Pfam profile PF02902: Ulp1 protease
family, C-terminal catalytic domain
Length = 783
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 296 VVIIPTISTVTAVTCTGNKMTPPFSCSDLVSSTTSESLG 180
V+IIP + + CT +K+T +C ++ SS+ + + G
Sbjct: 148 VLIIPDVIIYGDIYCTNSKLTFSRNCMNVESSSVNATKG 186
>At3g31540.1 68416.m04025 hypothetical protein
Length = 699
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 7 ASAAPDIAKPSESNPPTETKPEQPAAGPLK 96
A AAPD+ ++PPTET + A P +
Sbjct: 411 APAAPDVVDQVPADPPTETATQAVIALPAR 440
>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24280) [Saccharomyces
cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
come from this gene
Length = 540
Score = 27.1 bits (57), Expect = 3.7
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +1
Query: 22 DIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDS--- 192
++ KP E K E+ A +++ ++ V+ A + ++ V + P++
Sbjct: 105 EVVKPEAE---VEKKKEEAAEEKVEEEKKSEAVVTEEAPKAETVEAVVTEEIIPKEEVTT 161
Query: 193 --EVVEETKSEQEKGGVILLPVQVTAVTVEM 279
E VEE E+EK ++ +V A T+E+
Sbjct: 162 VVEKVEEETKEEEKKTEDVVTEEVKAETIEV 192
>At5g19610.1 68418.m02334 sec7 domain-containing protein similar to
SP|Q42510 Pattern formation protein EMB30 (GNOM)
{Arabidopsis thaliana}; contains Pfam profile PF01369:
Sec7 domain
Length = 1375
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 168 IDCCLDFFNCSCDALQNWAVLENL 97
I CC+D F+ C L V+ENL
Sbjct: 239 IRCCIDIFHFLCSLLNVVEVVENL 262
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 4 VASAAPDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVK 180
V +A +KPSES P +PE P L+ + + A++KI + + NP K
Sbjct: 63 VLKSALKRSKPSESTPEPVPEPEAPKK-RLQFKTSTDASEEQVIEAMQKITSHIKNPSK 120
>At1g79160.1 68414.m09230 expressed protein
Length = 239
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 112 SPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQEKGGVILLPVQV 258
SPV+ G G + + +NNP PR +V + +K I L + +
Sbjct: 191 SPVVAGCPGCLSYVLVMMNNPKCPRCDTIVPLPTNPMKKKPKIDLNISI 239
>At1g55160.1 68414.m06299 expressed protein
Length = 188
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 97 QIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSE 195
++F N P + I +K ++ NNP P S+
Sbjct: 7 KLFTNKPKKKAIIAQLKHVEANFNNPTVPPSSK 39
>At1g49190.1 68414.m05515 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
;contains similarity to two-component response regulator
protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
Length = 608
Score = 26.2 bits (55), Expect = 6.5
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 19 PDIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEV 198
PD+A P +S+P + +Q A +I E+ P++ + T ++P S++
Sbjct: 158 PDVAPPVQSDPARSDRLDQVKAD--FKIVEDEPIIN------ETPLITWTEEIQPVQSDL 209
Query: 199 VEETKSEQEKG 231
V+ K +Q G
Sbjct: 210 VQANKFDQVNG 220
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 31 KPSESNPPTETKPEQPAAGPLKQIFENSPVL 123
K S TE ++ AA PLK + + PV+
Sbjct: 642 KASSKRKKTEKPAKEQAAAPLKSVSKEKPVI 672
>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
polygalacturonase [Lycopersicon esculentum] GI:4325090;
contains Pfam profile PF00295: Polygalacturonase
(pectinase)
Length = 486
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPAAGP 90
+ P + PPT TKP PA P
Sbjct: 367 VEPPQQVEPPTPTKPLAPAKPP 388
>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
putative contains Pfam domains PF00560: Leucine Rich
Repeat and PF00069: Protein kinase domain
Length = 772
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 34 PSESNPPTETKPEQPAAGP 90
PS PP+ T P++P GP
Sbjct: 254 PSPETPPSPTSPKRPFFGP 272
>At1g50680.1 68414.m05699 AP2 domain-containing transcription
factor, putative similar to RAV1 [Arabidopsis thaliana]
GI:3868857
Length = 337
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 202 EETKSEQEKGGVILLPVQV 258
+ETKSE+ KGG +L V++
Sbjct: 316 KETKSEENKGGFMLFGVRI 334
>At1g20000.1 68414.m02505 transcription initiation factor IID
(TFIID) 28 kDa subunit (TAFII-28) family protein similar
to SP|Q15544 Transcription initiation factor TFIID 28
kDa subunit (TAFII-28) (TAFII28) (TFIID subunit
p30-beta) {Homo sapiens}; contains Pfam profile PF04719:
hTAFII28-like protein conserved region
Length = 204
Score = 25.8 bits (54), Expect = 8.6
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 25 IAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVE 204
+ + S P E E+ P+ E L+G AVKK +T+V K +D VE
Sbjct: 29 VPRMKHSKDPFEAAMEEQEESPV----ETEQTLEGDERAVKKCKTSVVAEAKNKDE--VE 82
Query: 205 ETKS 216
TK+
Sbjct: 83 FTKN 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.129 0.353
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,260,532
Number of Sequences: 28952
Number of extensions: 140048
Number of successful extensions: 518
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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