Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30487
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    38   0.002
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    32   0.076
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    28   1.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.6  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   2.2  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   6.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   8.7  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
 Frame = +3

Query: 315 WKQYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGK--SDN------- 467
           +K Y  LE I  ++  +A  Y  +  +  +G + EGR +  L++ NG+  SDN       
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKL-NGRHPSDNGEKIRNK 238

Query: 468 KAVFIDGGIHARE 506
           K + I GG HARE
Sbjct: 239 KVIIIQGGSHARE 251


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 336 EDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGKSDNKAVFID 485
           +D   F   +  +Y S I VKS GKS +G     +R   G  D+  VF+D
Sbjct: 498 DDEEAFEKQVTSSYSSPIKVKSQGKSSKGSSGLDVREHEGSDDDAEVFVD 547


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 67  SGARQVIGRLRRRNLISTWGGNQSSVDILIKPNVVENITRVFKRESIDYNVV 222
           S A  + G L+  NLI+ W  N+ ++D     +  E++ + F  E+  +N+V
Sbjct: 171 SEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDVEKRF--EAYGWNIV 220


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 333  LEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGKS 461
            + D+  F D    + PSI +V SI  +  G DL I +I  G S
Sbjct: 1356 IPDVRTFQDNFIDSLPSIWNVVSITINNSGEDLFISKIRKGHS 1398


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 601 NTQSMPLNIVRFHIEILSKLVDKVSDGC 518
           +T ++P +++  HIE+L KL    +D C
Sbjct: 393 STMALPDSLISLHIELLRKLCSSENDFC 420


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 651  TVMCILVSHLDSTTRHEIPSRCPLISSDSTSKYSA 547
            +++  LV++LDS  + EI S  P + +   S YSA
Sbjct: 1177 SILRFLVAYLDSGLQSEIVSTLPHLLATLQSNYSA 1211


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 664 PRTIHGNVYTRIPSGFHDPA*NTQSMPLNIVRFHIEILSKL 542
           P+ + GN  TR+PS   D   N  S  +      + I++K+
Sbjct: 363 PQIVEGNYDTRLPSALPDEIHNVDSSVIISEATFVNIITKV 403


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 363 LAKTYPSIISVKSIGKSF-EGRDLKILR-ISNGKSDNKAVFI 482
           LAK YP+I    SI  SF +G  ++ILR  ++  SD K + +
Sbjct: 272 LAKEYPTIAFHASINNSFGKGSLIQILRQFASLHSDKKQISV 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,326,355
Number of Sequences: 5004
Number of extensions: 72445
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)