Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30487
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             32   0.42 
06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732           30   2.3  
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718     28   9.1  
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837           28   9.1  
05_03_0414 + 13650483-13651388,13651559-13651657                       28   9.1  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 195 KREHRLQRRDRRFTKEDQ*GNPPLDNDEIELQDRRGHRMTWKQYH 329
           K+ HR  R+DR+  +  +  +   D DE   +DRR  R   +Q+H
Sbjct: 273 KKRHRKSRKDRKRRRSHRRSDDTSDEDESGGEDRRRRRHRKRQHH 317


>06_01_0491 + 3506425-3506427,3506610-3506810,3507517-3507732
          Length = 139

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 112 ISTWGGNQS-SVDILIKPNVVENIT 183
           I  WGGN   SVDI + PN ++N+T
Sbjct: 8   IGPWGGNGGGSVDISVPPNSLKNVT 32


>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
          Length = 490

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 548 AEYFDVESDDIKGHRLGISCRVVESRWDTSIHITVDRPWEGRTESLGYRACTWVLIL 718
           +EYF +   D+   R  +   +  ++  TS  +     W  RT +LGYR C  V ++
Sbjct: 283 SEYFILSQIDMAALRRHVPLNL--NKTVTSFELLTAVTWRSRTIALGYRPCHIVRLM 337


>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
          Length = 364

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 132 SVFCGHPYQTECRRKYYTCFQKREHRLQRRD 224
           SV C   + + C  K  TC Q  E RL RRD
Sbjct: 234 SVRCMTDHDSACLFKILTCEQSCEKRLMRRD 264


>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 132 SVFCGHPYQTECRRKYYTCFQKREHRLQRRD 224
           SV C   + + C  K  TC Q  E RL RRD
Sbjct: 205 SVRCMQDHDSACLFKILTCEQNCEKRLLRRD 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,582,055
Number of Sequences: 37544
Number of extensions: 477818
Number of successful extensions: 1265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)