Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30487
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               40   0.002
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               40   0.003
SB_9115| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               38   0.009
SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.081
SB_28200| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   3.0  
SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)         29   4.0  
SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         28   7.0  
SB_59642| Best HMM Match : DUF822 (HMM E-Value=5)                      28   9.3  
SB_16004| Best HMM Match : efhand (HMM E-Value=1.7)                    28   9.3  
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 28   9.3  

>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 313

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = +3

Query: 324 YHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRD---LKILRISNGKSD 464
           YH L +I+  +  LAK Y S+ S  S+GKS+E RD   +KIL   +  SD
Sbjct: 54  YHSLSEIHAEILALAKAYSSVASNFSLGKSYENRDQLAIKILETGDSDSD 103


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 324 YHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISN 452
           +H  E + G ++   K YP I  + S+GK+ E RDL +L IS+
Sbjct: 33  HHNYEAMKGLLEKFNKEYPDITRLYSVGKTVENRDLLVLEISD 75


>SB_9115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 15/39 (38%), Positives = 29/39 (74%)
 Frame = +3

Query: 333 LEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRIS 449
           LED +  +D LA+ +P+I  V +IG+S++G+ L+++ I+
Sbjct: 4   LEDPHAIIDSLAEKFPNITRVYTIGRSYQGKSLRVIEIT 42


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +3

Query: 321 QYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISN 452
           ++H  ++   F+  L   +P+I  + SIGKS EGRDL ++ +S+
Sbjct: 632 KHHNYDETLSFLKELHGQFPNITRLYSIGKSVEGRDLWVIALSS 675


>SB_1170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 321 QYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGKSDNK 470
           Q+H  E +  F+ Y +  YP I  + SIG S + R L  + IS+    ++
Sbjct: 62  QHHNYEKLTWFLKYFSLKYPDITRLYSIGYSVQNRKLWAMEISDNPGQHE 111


>SB_28200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 342 IYGFMDYLAKTYPSIISVKSIGKSFEGRDL 431
           I G M  L++T PS +S+   GK++EGR +
Sbjct: 1   IVGEMTRLSRTNPSTVSLVDFGKTYEGRKI 30


>SB_23383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +3

Query: 321 QYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISN 452
           ++H  +++  F+  + + YP I  + S G S +GR+L ++ IS+
Sbjct: 497 KHHTHKEMTSFLKKVHELYPHITRLYSAGYSVKGRELWVMEISD 540



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 324 YHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISN 452
           YH  +++   ++  +K Y  I  + S+GKS   R L  L+I++
Sbjct: 40  YHNYDELTRLLESYSKRYKKIARLHSVGKSVLNRHLWALQITD 82


>SB_27587| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 879

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 324 YHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISN 452
           YH  +++   ++  +K Y  I  + S+GKS   R L  L+I++
Sbjct: 40  YHNYDELTRLLESYSKRYKKIARLHSVGKSVLNRHLWALQITD 82


>SB_49771| Best HMM Match : Peptidase_M14 (HMM E-Value=1.1e-34)
          Length = 635

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 321 QYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRIS 449
           +YH  + +   +       P II ++SIGKS EGR +  L IS
Sbjct: 10  KYHDYKTMTQMLQSYYLKCPGIIRLQSIGKSQEGRKIWSLEIS 52


>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 364 WQKPILLSSV*NQ*ENHLKVEILRYSAYQTVNQTTKPCSSTAVSTLVNDKSR 519
           W K I+ +S  NQ   HL+++ + Y+A + V  T++    T  S +V + SR
Sbjct: 834 WWKAIIGNSNRNQLNKHLRIKPVIYAAIKRVGGTSRIVGGT--SRVVGEMSR 883


>SB_59642| Best HMM Match : DUF822 (HMM E-Value=5)
          Length = 595

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = +1

Query: 4   DHEPKKIDYSGSQVWQV----STTKSGARQVIGRLRRRNL-ISTWGGNQSSVDILIKPNV 168
           D EP + + + S +++     S T S     +   + +N  +    G++ +V   +  N 
Sbjct: 10  DDEPTEKEVTNSNMFKFIAVGSRTASQLTDQVSAGKHKNACVPHARGDKDTVLSCVDDNF 69

Query: 169 VENITRVFKRESIDYNVVIEDLQKRINEEIRR*ITMKLNCKTDEVTE*HGNSITD 333
           V N+T    + S D N +I+D      ++I++ +      +TDEV   H  S  D
Sbjct: 70  VSNVTEAQWQPSSDNNRLIDDEVTISRKKIKKFVRFVTEEETDEVL--HSKSAYD 122


>SB_16004| Best HMM Match : efhand (HMM E-Value=1.7)
          Length = 201

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 439 SAYQTVNQTTKPCSSTAVST 498
           +AY +VN+T KPCS++A  T
Sbjct: 182 NAYISVNRTIKPCSNSACCT 201


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
 Frame = +1

Query: 4    DHEPKKIDYSGSQVWQV----STTKSGARQVIGRLRRRNL-ISTWGGNQSSVDILIKPNV 168
            D EP + + + S +++     S T S     +   + +N  +    G++ +V   +  N 
Sbjct: 725  DDEPTEKEVTNSNMFKFIAVGSRTASQLTDQVSAGKHKNACVPHARGDKDTVLSCVDDNF 784

Query: 169  VENITRVFKRESIDYNVVIEDLQKRINEEIRR*ITMKLNCKTDEVTE*HGNSITD 333
            V N+T    + S D N +I+D      ++I++ +      +TDEV   H  S  D
Sbjct: 785  VSNVTEAQWQPSSDNNRLIDDEVTISRKKIKKFVRFVTEEETDEVL--HSKSAYD 837


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,855,973
Number of Sequences: 59808
Number of extensions: 542848
Number of successful extensions: 1355
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)