Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30487
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21950.1 68416.m02769 S-adenosyl-L-methionine:carboxyl methyl...    32   0.47 
At4g27060.1 68417.m03891 expressed protein                             30   1.9  
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa...    30   1.9  
At5g38020.1 68418.m04580 S-adenosyl-L-methionine:carboxyl methyl...    29   3.3  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    29   4.4  

>At3g21950.1 68416.m02769 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 335

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
 Frame = -3

Query: 724 LLENQYPGASTVTQAFCSSLPRTIHGNVYTR-IPSGFHDPA*NTQSMPLNIVRFHIEILS 548
           L EN +     +  +F   L   + GN Y    P  F+     ++S+      F +  LS
Sbjct: 62  LPENDFNTTFKLIPSFHEKLKMNVKGNCYVSGCPGSFYTRLFPSKSLHFVHSSFCLHWLS 121

Query: 547 KLVDKVSDGCGTYHSRAWIPPSMNTALLSDLPFDMRSILRSRPSNDFP 404
           K+ D + +     + R+  PP++  +  +    D    LR R     P
Sbjct: 122 KVPDGLEENKKNVYLRSPCPPNLYESYWNQFKKDFSMFLRMRAEETMP 169


>At4g27060.1 68417.m03891 expressed protein
          Length = 864

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +1

Query: 154 IKPNVVENITRVFKRESIDYNVVIEDLQKRINEEIRR*ITMKLNCKTDEVTE 309
           +K  ++ +I+++  R++  Y + +EDL+K I       + M LNC  D  ++
Sbjct: 42  LKQKILTSISKLADRDT--YQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSD 91


>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 576

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +3

Query: 348 GFMDYLAKTYPSIISVKSIGKSF-EGRDLKILR-ISNGKSDNKAVFI 482
           G++  L+K YP++    S+ KSF +G  L +LR  +  KSD +A+ +
Sbjct: 266 GWLRVLSKEYPTLAFHASVNKSFGKGSLLSVLRQFARLKSDKQAISV 312


>At5g38020.1 68418.m04580 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 368

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
 Frame = -3

Query: 724 LLENQYPGASTVTQAFCSSLPRTIHGNVY-TRIPSGFHDPA*NTQSMPLNIVRFHIEILS 548
           L +N +     +  AF   L   + G  + + +P  F+     ++S+        +  LS
Sbjct: 95  LPDNDFNTTFKLVPAFHKLLKMDVKGKCFISGVPGSFYSRLFPSKSLHFVHSSLCLHWLS 154

Query: 547 KLVDKVSDGCGTYHSRAWIPPSMNTALLSDLPFDMRSILRSRPSNDFP 404
           K+ D + D     + R+  PP++  + L+    D    LR R     P
Sbjct: 155 KVPDGLEDNKKNVYLRSPCPPNVYKSYLTQFKNDFSLFLRLRADETVP 202


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/66 (30%), Positives = 28/66 (42%)
 Frame = +3

Query: 150 PYQTECRRKYYTCFQKREHRLQRRDRRFTKEDQ*GNPPLDNDEIELQDRRGHRMTWKQYH 329
           P + +  RK Y   ++RE  LQR         Q  N  L+N ++    R  H     Q  
Sbjct: 430 PGENKKHRKEYIALKRRERMLQRGVDLADINSQLENFVLENVDMHCFQRM-HNRDCSQVR 488

Query: 330 RLEDIY 347
           RL D+Y
Sbjct: 489 RLADVY 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,938
Number of Sequences: 28952
Number of extensions: 382983
Number of successful extensions: 1084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)