Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30486
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    25   0.55 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    25   0.55 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    25   0.55 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   8.9  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 746 WGTEFQGLNTLDSVTIFNPFKFKRTQKLNQFAFSNPK 636
           WG E+  L+ LD+V   +    +RT       + NPK
Sbjct: 285 WGPEWNLLDGLDAVAFIDNHDNQRTGGSQILTYKNPK 321


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 746 WGTEFQGLNTLDSVTIFNPFKFKRTQKLNQFAFSNPK 636
           WG E+  L+ LD+V   +    +RT       + NPK
Sbjct: 286 WGPEWNLLDGLDAVAFIDNHDNQRTGGSQILTYKNPK 322


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 746 WGTEFQGLNTLDSVTIFNPFKFKRTQKLNQFAFSNPK 636
           WG E+  L+ LD+V   +    +RT       + NPK
Sbjct: 286 WGPEWNLLDGLDAVAFIDNHDNQRTGGSQILTYKNPK 322


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 66  IDDPQYHMGHLFMDCMRRRPDSVCQIDAATGETE 167
           +DDP   MGH     M  +P    Q   A GE E
Sbjct: 1   MDDPGRMMGHTGGGLMPPQPYMNAQDAPAGGENE 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,190
Number of Sequences: 336
Number of extensions: 4157
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)