Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30486
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   5.6  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    26   5.6  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 478  VPVKCDDSRVEP*FAGSFQVIFPLILLTKRYFW--LRQFEK 362
            VP+  DD R    +AG ++   P I+L    FW  LR+FE+
Sbjct: 915  VPIDIDDLRRHTVYAGGYEPNSPTIVL----FWEVLREFEE 951


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +1

Query: 4   ECNAFIINNSVLSTSIKCL----STLTTLNTTWDIY 99
           EC+A+  NNS LS+SI  +    STL+ L+T   +Y
Sbjct: 229 ECDAWQANNSELSSSICSISANWSTLSLLSTEGCVY 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,654
Number of Sequences: 5004
Number of extensions: 66319
Number of successful extensions: 179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)