Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30486
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428...    34   0.16 
07_03_1439 - 26556398-26556418,26556700-26557743                       32   0.48 
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206...    31   1.1  
03_06_0678 - 35480711-35484658                                         31   1.5  
02_05_0403 - 28696043-28696153,28696245-28696347,28696443-286965...    31   1.5  
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887...    29   3.4  

>02_01_0577 +
           4280590-4281225,4281749-4282102,4282214-4282412,
           4284991-4285204,4285299-4285401,4285481-4285639
          Length = 554

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 135 CQIDAATGETETNASVLQRSVRLAKYMRTLGLNPGDVL 248
           C ID  TGE+ T A V   S R A  +R +G+  GDV+
Sbjct: 43  CLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVV 80


>07_03_1439 - 26556398-26556418,26556700-26557743
          Length = 354

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +3

Query: 75  PQYHMGHLFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNPGDVLAL 254
           P+Y + H+ +   R RP  V   DA+TG   + A +   S+R+A+ +   GL  G V  L
Sbjct: 35  PEYILPHMLLPGRRARPAFV---DASTGAALSFAGLRALSLRVARALAAAGLRRGRVALL 91


>05_01_0269 +
           2062467-2062475,2063252-2063303,2063668-2063743,
           2064156-2064288,2064400-2064578,2065228-2065495,
           2066250-2066342,2066667-2066776,2066887-2066905,
           2066985-2067170
          Length = 374

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 698 FNPFKFKRTQKLN-QFAFSNPKLWWFDGSYFSELLMCPPVLT 576
           +N +K ++++ L  Q A+S P   + DGS+    L+ PP  T
Sbjct: 148 YNLYKIQKSESLQLQLAWSTPAQGFLDGSWLCRALLAPPFHT 189


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -2

Query: 728 GLNTLDSVTIFNPFKFKRTQKLNQFAFSNPKLWWFDGSYFSELLMCPPV 582
           GLN L +  I+  F F R ++L   +  N + WW       E L+ P V
Sbjct: 811 GLNCLFNCDIYTSFTFCRLKELTLASMRNFETWWDTNEVKGEELIFPEV 859


>02_05_0403 -
           28696043-28696153,28696245-28696347,28696443-28696510,
           28696582-28696727,28698038-28699124
          Length = 504

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 123 PDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNPGD 242
           PD+ C I AATG T T A       R A  +  LG+  GD
Sbjct: 55  PDAPCLIAAATGRTYTFAETRLLCRRAAAALHRLGVGHGD 94


>08_01_0900 +
           8867895-8868938,8869887-8870085,8871500-8871713,
           8871854-8871959,8872077-8872199
          Length = 561

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 108 CMRRRPDSV---CQIDAATGETETNASVLQRSVRLAKYMR--TLGLNPGDVL 248
           C  R P+     C ID ATG   T A V + S RLA  +R   LGL  G V+
Sbjct: 40  CFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVV 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,600,225
Number of Sequences: 37544
Number of extensions: 429247
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)