Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30486
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)            32   0.49 
SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)             31   0.85 
SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06)                    29   4.6  
SB_53742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)                   28   8.0  
SB_22977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)                      28   8.0  
SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)            28   8.0  
SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_2184| Best HMM Match : AMP-binding (HMM E-Value=8.5e-06)
          Length = 757

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 102 MDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNPGDVLAL 254
           +DC +R  D    +D  TGET T   ++    +    +   G+ P DV  L
Sbjct: 452 LDCCKRNGDKEALVDGPTGETYTYTDLITLIKKCGSALLQAGVKPKDVALL 502


>SB_42391| Best HMM Match : Hydrolase (HMM E-Value=5.1e-17)
          Length = 254

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 326 VDPLFKIHEIKSFFKLTQPKIAFCQQNQRENYLEAARELGLDTRV-ITFDGDEPMSK 493
           ++PL  ++ I S  K    KIA C  + R   + A   LGL + + +   GD+ +SK
Sbjct: 121 LEPLGDLNNIFSTLKSNNVKIAVCTADSRSGTMSALDRLGLTSMIDMVVCGDDEISK 177


>SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06)
          Length = 229

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 355 DFMYFE*WIDAGY-RISIH*GSI-IWYIKIQVVSSPSASTSPGLRPSVRMYLANRTDRCS 182
           D+++   WID  +       GSI +W I +   ++P AS+ PG+RP V   L+      S
Sbjct: 15  DWVFATEWIDNNHVTTGSRDGSIALWEIPVMCSATP-ASSLPGIRPPVIAPLSTLKSNLS 73

Query: 181 TD 176
           T+
Sbjct: 74  TN 75


>SB_53742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 66  WDLLFPKSGPPTTAEDYDITLLICLLRNICG 96


>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
          Length = 274

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 66  WDLLFPKSGPPTTAEDYDITLLTCLLRNICG 96


>SB_22977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 66  WDLLFPKSGPPTTAEDYDITLLICLLRNICG 96


>SB_10432| Best HMM Match : OmpH (HMM E-Value=5.2)
          Length = 393

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 66  WDLLFPQSGPPTTAEDYDITLLTCLLRNICG 96


>SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)
          Length = 817

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 210 WDLLFPKSGPPTTAEDYDITLLTCLLRNICG 240


>SB_32046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 621 WQLLFRTPDVPTSAHEPDINL--CLSRKVAG 535
           W LLF     PT+A + DI L  CL R + G
Sbjct: 574 WDLLFPKSGPPTTAEDYDITLLICLLRNICG 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,453,968
Number of Sequences: 59808
Number of extensions: 481948
Number of successful extensions: 1365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)