Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30486
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    44   1e-04
Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    33   0.19 
AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical ...    28   9.3  
AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain pro...    28   9.3  
AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.     28   9.3  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 23/62 (37%), Positives = 32/62 (51%)
 Frame = +3

Query: 96  LFMDCMRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNPGDVLALGEETTWI 275
           LF+D +++ P+    ID  T  TET A       R A Y + LG   GDV+AL  E +  
Sbjct: 114 LFLDIVKKNPNKPAMIDIETNTTETYAEFNAHCNRYANYFQGLGYRSGDVVALYMENSVE 173

Query: 276 FI 281
           F+
Sbjct: 174 FV 175


>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 111 MRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNP 236
           M    D+V  +    GET    +VLQRS+ + +Y+  LG +P
Sbjct: 403 MNENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYLLELGASP 444


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 111 MRRRPDSVCQIDAATGETETNASVLQRSVRLAKYMRTLGLNP 236
           M    D+V  +    GET    +VLQRS+ + +Y+  LG +P
Sbjct: 403 MNENDDNVFNVSNNFGETPLYVAVLQRSIEVVEYLLELGASP 444


>AL032656-3|CAD12890.1|  731|Caenorhabditis elegans Hypothetical
           protein Y106G6E.5 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 229 LTRVMYWHWGKKPPGSLYTILCCLNEWISYNRRRSTIQNT*NQKLFQIDATKNSVLSTKS 408
           L ++ +WHW       + TI  C  E      +R  I+    + +   D T N  +  K+
Sbjct: 567 LAKLAFWHWKLDASEKMLTITGCDGENYVEGVQRDDIRQVWIKDI--ADVTNNDEIDRKA 624

Query: 409 TGKLLGSCPRTR 444
           +     S P T+
Sbjct: 625 SSSRFTSSPSTQ 636


>AF416781-1|AAL38510.1|  731|Caenorhabditis elegans PH domain
           protein CED-12 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 229 LTRVMYWHWGKKPPGSLYTILCCLNEWISYNRRRSTIQNT*NQKLFQIDATKNSVLSTKS 408
           L ++ +WHW       + TI  C  E      +R  I+    + +   D T N  +  K+
Sbjct: 567 LAKLAFWHWKLDASEKMLTITGCDGENYVEGVQRDDIRQVWIKDI--ADVTNNDEIDRKA 624

Query: 409 TGKLLGSCPRTR 444
           +     S P T+
Sbjct: 625 SSSRFTSSPSTQ 636


>AF324505-1|AAL49495.1|  731|Caenorhabditis elegans CED-12 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 229 LTRVMYWHWGKKPPGSLYTILCCLNEWISYNRRRSTIQNT*NQKLFQIDATKNSVLSTKS 408
           L ++ +WHW       + TI  C  E      +R  I+    + +   D T N  +  K+
Sbjct: 567 LAKLAFWHWKLDASEKMLTITGCDGENYVEGVQRDDIRQVWIKDI--ADVTNNDEIDRKA 624

Query: 409 TGKLLGSCPRTR 444
           +     S P T+
Sbjct: 625 SSSRFTSSPSTQ 636


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 268 VVSSPSASTSPGLRPSVRMYLANRTDRCSTDAFVSVSPVAASIW 137
           V ++P A+T+P  RPS +   +  T +C     V        IW
Sbjct: 517 VTNNPRATTAPATRPSNQGNNSTSTSQCGQKTEVKEGDTCFKIW 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,371,515
Number of Sequences: 27780
Number of extensions: 371622
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)