Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30485
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    63   3e-11
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    36   0.005
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    26   3.9  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    26   5.1  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   6.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.0  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    25   9.0  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 48/143 (33%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
 Frame = +1

Query: 16  TAGHFAIAKFEDNHGSQKKITVITQNVDGLHARAGT--KRLIELHGNLYKTRCTKCKEVL 189
           T  H+ I    D    QK     TQN+D L   AG   K LIE HG+   +RC +C E+ 
Sbjct: 97  TYTHYFIRLLHDKRLLQK---CYTQNIDTLERLAGVPDKALIEAHGSFQYSRCIECYEMA 153

Query: 190 VNNDSPICTCK*RSPRF*YGGFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAA 369
                  C               I  K +P C    C  L++P IV++GE L     E  
Sbjct: 154 ETEYVRAC---------------IMQKQVPKCNS--CKGLIKPMIVFYGEGLPMRFFEHM 196

Query: 370 EHAMSTCDVCLVVGTSSVVYPAA 438
           E     CD+ LV+GTS +V+P A
Sbjct: 197 EKDTKVCDMALVIGTSLLVHPFA 219


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 10  NYTAGHFAIAKFEDNHGSQKKITVITQNVDGLHARAGTK--RLIELHGNLYKTRCTKCK 180
           +Y+  H  I   E  +   K  T+ TQN+D L  + G    ++I+ HG+     C KCK
Sbjct: 223 HYSPSHAFIRLLEKKN---KLSTLFTQNIDNLEKKTGLSDNKIIQCHGSFATATCIKCK 278


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -2

Query: 555 QC--CTTRSFEVKNGNQVGRCWFYIKFCY-NCT 466
           QC  C TR F   N N+  RC+  + +CY +CT
Sbjct: 138 QCSACGTRFFN--NDNENTRCYVKLNYCYPDCT 168


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 573 SASACGQCCTTRSFEVKNGNQVGRCWFYIKFCYNCTPRSCL 451
           +A   G     +  E  + N++  CWF+ KF     PR  L
Sbjct: 349 AAPTIGYNIKPKHAEGYSSNEITHCWFWPKFSEFLKPRDVL 389


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 448 EQTLPQDIPLMMYQQLG----IHHRWTLHVQLLPKYHVLN 341
           E  L  ++  +M Q L     +HH W LH  L P   ++N
Sbjct: 168 EDFLQSEVKTLMLQLLAATAFMHHHWYLHRDLKPSNLLMN 207


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 426  ISCGNVCSTSSFEGCN 473
            ++CGN C  SS  GC+
Sbjct: 994  LACGNACYDSSIYGCS 1009


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 146 EIYTKLDVQNVRKYW*IMTALYALANRGAPDSNMV 250
           E+Y  LD QN    + + TA+Y +   G P + ++
Sbjct: 336 EVYEFLDNQNKVSEFPLFTAVYRIVYEGLPPNKLL 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,488
Number of Sequences: 5004
Number of extensions: 65623
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)