Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30485
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 67 1e-11
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 50 2e-06
05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330 30 1.7
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514... 28 7.0
10_02_0131 + 5595135-5595184,5596121-5596289,5596376-5596655,559... 28 7.0
09_04_0101 + 14611622-14613133 27 9.2
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 27 9.2
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 66.9 bits (156), Expect = 1e-11
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 2/165 (1%)
Frame = +1
Query: 16 TAGHFAIAKFEDNHGSQKKITVITQNVDGLHARAGTKR--LIELHGNLYKTRCTKCKEVL 189
T H A+ + E G K VI+QNVD LH R+G R L ELHGN +K C CK+
Sbjct: 62 TLTHMALVELEKT-GRLK--FVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEY 118
Query: 190 VNNDSPICTCK*RSPRF*YGGFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAA 369
+ D I T G D P + C +CGA L+ ++ + ++L + ++AA
Sbjct: 119 L-RDFEIET---------IGLKDTPRR----CSDKNCGARLKDTVLDWEDALPPEEMDAA 164
Query: 370 EHAMSTCDVCLVVGTSSVVYPAAMFAPQAASRGAIVAEFNIEPTP 504
+ D+ L +GTS + PA + G VA N++ TP
Sbjct: 165 KEQCQKADLVLCLGTSLQITPACNMPLLSLKNGGRVAIVNLQATP 209
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = +1
Query: 274 LPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQ 453
+P C + CG +L+P +V FG+++ + E+ + A CD LVVG++ + A A
Sbjct: 218 IPSCNQ--CGGVLKPDVVMFGDNVPEERAESTKEAARNCDALLVVGSALMTMSAFRLARL 275
Query: 454 AASRGAIVAEFNIEPTPANLISIFYFEGPC 543
A A +A I T A+ I C
Sbjct: 276 AHEANAPIAAITIGETRADSILSLKINARC 305
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 4 KANYTAGHFAIAKFEDNHGSQKKITVITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
+A + H+A+A E + +++TQNVD LH RAG+K +ELHG++Y+ C C
Sbjct: 104 RAQPNSAHYALASLER---IGRVHSMVTQNVDRLHHRAGSKP-VELHGSVYEVACLDC 157
>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
Length = 564
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 259 IPVKLLPHCKKAHCGALLRPHIVWFGESLEHD---ILEAAEHAMSTCDVCLVVGTSSVV 426
+PV+ P+ + +CGA+ H G S+ HD + + EH V + VGT+ ++
Sbjct: 437 VPVEPSPNTNQGNCGAVAHSHP---GGSIIHDRYPVDDIEEHTKCKIQVAIGVGTNFII 492
>12_01_0624 -
5137096-5137310,5137923-5138380,5138428-5140070,
5140245-5140462,5140589-5140757,5141249-5141305
Length = 919
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -1
Query: 469 HPSKLLVEQTLPQDIPLMMYQQLGIHHRWTLHVQLLPKYHVLNFHRTTQCVVLARLHN 296
HPS+ V + + + + +L W H+Q +P H L R + L +HN
Sbjct: 652 HPSRAAVAFPILETLEFTVVLELE-EWVWEEHIQAMPLLHELTLDRALSVLKLFMVHN 708
>10_02_0131 +
5595135-5595184,5596121-5596289,5596376-5596655,
5596738-5596834,5596931-5597055,5597145-5597223,
5597301-5597337
Length = 278
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 502 VLVLY*ILLQ-LHPSKLLVEQTLPQDIPLMMYQQLGIHHRWTLHVQLLPKYHVLNFHRTT 326
V VLY +L L+P +++ + +P+ + + W+L V++ KYHV F +
Sbjct: 3 VQVLYGVLHHSLNPRMGSLKRKRVEALPVPTFSDVHPRGSWSLGVRVYHKYHVERFAPSR 62
Query: 325 QCVVLARLHNEPFYSVVII 269
+ + L L + V II
Sbjct: 63 KRLNLVLLDEQGTKMVAII 81
>09_04_0101 + 14611622-14613133
Length = 503
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 188 NTSLHFVHRVLYKFP*SSINLF---VPALACKP 99
N LH HR+L P S++LF +P LA P
Sbjct: 51 NPHLHLAHRLLLSLPSPSLDLFNLLLPPLASSP 83
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Frame = -2
Query: 534 FEVKNGNQVGRCWFYIKFCYNCTPRSCLWSKHCRRIYH**CTNN*AYI-------TGGHC 376
FEV +G +GR W + +NCT L+ + I C +N YI T +
Sbjct: 148 FEVLDG-LLGRHWRNVGLAFNCT--FLLFGSVIQLIA---CASNIYYINDKLDKRTWTYI 201
Query: 375 MFSCFQNIMF*TFTEPHNVWS*QGSTMSLFTVW 277
+C +F + +WS G M+ +T W
Sbjct: 202 FGACCATTVFIPSFHNYRIWSFLGLVMTTYTAW 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,759
Number of Sequences: 37544
Number of extensions: 408074
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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