Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30485
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               82   3e-16
SB_18022| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)                  48   8e-06
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)                  43   2e-04
SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)              29   4.1  
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   29   4.1  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      28   5.4  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
 Frame = +1

Query: 25  HFAIAKFEDNHGSQKKITVITQNVDGLHARAGTKRLIELHGNLYKTRCTKCKEVLVNNDS 204
           H+A+AK E   GS   +  +TQNVD LH +AG+K +IELHG  ++  C  C ++      
Sbjct: 235 HYALAKLE-TLGSVHSL--VTQNVDALHTKAGSKNVIELHGCSHRVICLGCNQITARTAL 291

Query: 205 PICTCK*RSPRF*YGGFDIP----------VK--LLPHCKKAHCGALLRPHIVWFGESLE 348
                +        G    P          VK   +P CK   CG +L+P +V+FG+S+ 
Sbjct: 292 QKRMIEFNPDWHAVGQGQAPDGDTFLTSEAVKDFKVPPCKA--CGGILKPEVVFFGDSVP 349

Query: 349 HDILEAAEHAMSTCDVCLVVGTSSVVYPAAMFAPQAASRGAIVAEFNIEPTPANLISIFY 528
             I+  A   ++  D   ++G++  VY +  FA +A+ +G  +A  NI  T A+ ++   
Sbjct: 350 KQIVNIAYDRLAESDALWIIGSTVEVYSSYRFATEASKQGKPIAILNIGKTRADKLASLK 409

Query: 529 FEGPC 543
             G C
Sbjct: 410 VSGVC 414


>SB_18022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = +1

Query: 406 VGTSSVVYPAAMFAPQAASRGAIVAEFNIEPT 501
           VGTSSVVYPAA FAP  A RG  VAEFN+E T
Sbjct: 1   VGTSSVVYPAAGFAPMLAQRGVPVAEFNMEET 32


>SB_11507| Best HMM Match : SIR2 (HMM E-Value=3.4e-11)
          Length = 813

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +1

Query: 16  TAGHFAIAKFEDNHGSQKKITVITQNVDGLHARAGTKR--LIELHGNLYKTRCTKCKEVL 189
           T  H AI K ++         VI+QNVDGLH ++G  R  L ELHGN++  +C KC +  
Sbjct: 232 TLTHMAIVKLQEEGLVHY---VISQNVDGLHLKSGYPRSKLSELHGNMFVEKCDKCNKEY 288

Query: 190 VNNDSPICTCK*RSPR 237
           V   +     + RS R
Sbjct: 289 VRTTAVASVGQKRSGR 304


>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
          Length = 501

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
 Frame = +1

Query: 79  VITQNVDGLHARAG--TKRLIELHGNLYKTRCTKCKEVLVNNDSPICTCK*RSPRF*YGG 252
           V++QN DGLH R+G  ++ L E+HGN++   CT+C++  +       T +    R   G 
Sbjct: 166 VVSQNCDGLHIRSGLPSQALSEVHGNMFTEVCTECEDDRIYYRLFDVTERTAVRRHQTGR 225

Query: 253 FDIPVKLLPHCKKAHCGALLRPHIVWFGES--LEHDI-LEAAEHAMSTCDVCLVVGTS 417
           F         C    CG+ LR  IV FGE   LE  +  +AA       D  L +G+S
Sbjct: 226 F---------C--TDCGSPLRDTIVHFGEKGCLEQPLNWQAAFDVAKIADCILCLGSS 272


>SB_43176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 639

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +1

Query: 304 ALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAAM 441
           ++++P IV+FGESL  +         +  D+ +V+G+S  V P A+
Sbjct: 195 SIMKPDIVFFGESLPSNFYTHLGDDSNKADLLIVIGSSLKVRPVAL 240


>SB_52117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 73  ITVITQNVDGLHARAG--TKRLIELHGNLYKTRCTKC 177
           + + TQN+DGL   AG   ++L+E HG      C  C
Sbjct: 196 LRMYTQNIDGLERLAGLPAEKLVEAHGTFSTASCISC 232



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 307 LLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYPAA 438
           +++P +V+FGE L      + E     CD+ LV+GTS  V P A
Sbjct: 244 VIKPDVVFFGEDLPKRFY-SFEIDFRKCDLLLVMGTSLEVEPFA 286


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 106  HARAGTKRLIELHGNLYKTRCTKCKEVLVNNDSP 207
            H R G + LIE H   YK  C   ++++   D P
Sbjct: 902  HKREGMEILIEAHNKEYKAACAVLQKLMKAGDDP 935


>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
          Length = 956

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 370 QLLPKYHVLNFHRTTQCVVLARLHNEPFYSVVIISQECQTHHIRIW 233
           +L+P   V+N + T Q ++  + H  P++ V   +  C T     W
Sbjct: 67  ELIPYPFVINVNNTLQSLLCLQSHRHPWFCVSCPTVTCPTMSASFW 112


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 486 KFCYNCTPRSCLWSKHCRRIYH 421
           +FCY+C   + ++SKHCR   H
Sbjct: 225 EFCYHCELVAPIFSKHCRLCNH 246


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 328 WFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVYP 432
           WF  S   +++ A EHA+++C  C  V ++ + YP
Sbjct: 774 WFASSNTEEVVGAMEHAVTSCFPC--VRSNLIDYP 806


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,927,175
Number of Sequences: 59808
Number of extensions: 500121
Number of successful extensions: 1041
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)