Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30485
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.60 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.60 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.2  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 81  YCNFFLGSMVIFEFSNSKMSR 19
           Y N+F  S VI E  N KMSR
Sbjct: 166 YPNYFFDSSVIEEAQNLKMSR 186


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 81  YCNFFLGSMVIFEFSNSKMSR 19
           Y N+F  S VI E  N KMSR
Sbjct: 166 YPNYFFDSSVIEEAQNLKMSR 186


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 343 NFHRTTQCVVLARLHNEPFYSVVIISQECQTHHIRIWGSSICKCI*GCHYSPILPYILY 167
           +FHR T          +P Y+ + ++ E  T    I+G ++       +YSP+L + LY
Sbjct: 225 SFHRLTSNT----FDYDPRYTKLTVAGESFTVKNGIYGIALSPVTNNLYYSPLLSHGLY 279


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 589 FLKRLISQCLWPVLYHKVLRSKKW 518
           FLKRLI+     V+Y+ + R + W
Sbjct: 24  FLKRLITGDEKWVVYNNIKRKRSW 47


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 589 FLKRLISQCLWPVLYHKVLRSKKW 518
           FLKRLI+     V+Y+ + R + W
Sbjct: 145 FLKRLITGDEKWVVYNNIKRKRSW 168


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 133 IELHGNLYKTRCTKC 177
           ++ H N+Y+ RC  C
Sbjct: 36  LKSHSNVYQYRCANC 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,356
Number of Sequences: 438
Number of extensions: 4592
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)