Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30485
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55760.1 68418.m06950 transcriptional regulator Sir2 family p...    52   3e-07
At5g09230.6 68418.m01054 transcriptional regulator Sir2 family p...    41   6e-04
At5g09230.5 68418.m01052 transcriptional regulator Sir2 family p...    41   6e-04
At5g09230.4 68418.m01053 transcriptional regulator Sir2 family p...    41   6e-04
At5g09230.3 68418.m01049 transcriptional regulator Sir2 family p...    41   6e-04
At5g09230.2 68418.m01051 transcriptional regulator Sir2 family p...    41   6e-04
At5g09230.1 68418.m01050 transcriptional regulator Sir2 family p...    41   6e-04
At5g46170.1 68418.m05679 F-box family protein contains F-box dom...    29   3.3  
At5g13190.1 68418.m01510 expressed protein                             28   4.4  
At5g03620.1 68418.m00321 subtilase family protein contains simil...    28   4.4  

>At5g55760.1 68418.m06950 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family
          Length = 473

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKR--LIELHGNLYKTRCTKC-KEVLVNNDSPICTCK*RSPRF*YG 249
           VI+QNVDGLH R+G  R  L ELHG+ +   C  C  E L + +      K  S +    
Sbjct: 111 VISQNVDGLHLRSGIPREKLSELHGDSFMEMCPSCGAEYLRDFEVETIGLKETSRK---- 166

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
                      C    CGA L+  ++ + ++L    ++ AE      D+ L +GTS  + 
Sbjct: 167 -----------CSVEKCGAKLKDTVLDWEDALPPKEIDPAEKHCKKADLVLCLGTSLQIT 215

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTP 504
           PA     +    G  +   N++ TP
Sbjct: 216 PACNLPLKCLKGGGKIVIVNLQKTP 240


>At5g09230.6 68418.m01054 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 271

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 74  MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 105



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 163 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 215

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTPAN 510
            A      A   GA+ A  NI  T A+
Sbjct: 216 SAFRLCRAAHEAGAMTAIVNIGETRAD 242


>At5g09230.5 68418.m01052 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 354

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 157 MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 188



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 246 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 298

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTPAN 510
            A      A   GA+ A  NI  T A+
Sbjct: 299 SAFRLCRAAHEAGAMTAIVNIGETRAD 325


>At5g09230.4 68418.m01053 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 271

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 74  MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 105



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 163 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 215

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTPAN 510
            A      A   GA+ A  NI  T A+
Sbjct: 216 SAFRLCRAAHEAGAMTAIVNIGETRAD 242


>At5g09230.3 68418.m01049 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 324

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 176 MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 207



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 265 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 317

Query: 430 PA 435
            A
Sbjct: 318 SA 319


>At5g09230.2 68418.m01051 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 373

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 176 MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 207



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 265 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 317

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTPAN 510
            A      A   GA+ A  NI  T A+
Sbjct: 318 SAFRLCRAAHEAGAMTAIVNIGETRAD 344


>At5g09230.1 68418.m01050 transcriptional regulator Sir2 family
           protein contains Pfam domain PF02146: transcriptional
           regulator, Sir2 family;
          Length = 373

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1

Query: 79  VITQNVDGLHARAGTKRLIELHGNLYKTRCTKC 177
           +ITQNVD LH RAG+  L ELHG +Y   C +C
Sbjct: 176 MITQNVDRLHHRAGSDPL-ELHGTVYTVMCLEC 207



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +1

Query: 250 GFDIPVKLLPHCKKAHCGALLRPHIVWFGESLEHDILEAAEHAMSTCDVCLVVGTSSVVY 429
           GF IPV     C+K  C  +L+P +++FG+++  +    A       D  LV+G+S +  
Sbjct: 265 GFHIPV-----CEK--CKGVLKPDVIFFGDNIPKERATQAMEVAKQSDAFLVLGSSLMTM 317

Query: 430 PAAMFAPQAASRGAIVAEFNIEPTPAN 510
            A      A   GA+ A  NI  T A+
Sbjct: 318 SAFRLCRAAHEAGAMTAIVNIGETRAD 344


>At5g46170.1 68418.m05679 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 395

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 382 STCDVCLVVGTSSVVYPAAMFAPQAASRGAIV 477
           ST D C+++G SSV+ P  M   QA     +V
Sbjct: 198 STLDNCVILGASSVIPPNPMRVSQACDTTTVV 229


>At5g13190.1 68418.m01510 expressed protein
          Length = 134

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = -2

Query: 495 FYIKFCYNCTPRSCLWSK--HC 436
           F + FC+ C    CLW+K  HC
Sbjct: 80  FMLGFCFLCPSMDCLWNKQHHC 101


>At5g03620.1 68418.m00321 subtilase family protein contains
           similarity to subtilisin-type serine endopeptidase XSP1
           GI:6708179 from [Arabidopsis thaliana]
          Length = 766

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +1

Query: 313 RPHIVWFGESLEHDILEAAEH 375
           +P+IV+ GE+ E+ ++EAAE+
Sbjct: 33  KPYIVYMGEATENSLVEAAEN 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,390
Number of Sequences: 28952
Number of extensions: 338526
Number of successful extensions: 734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)