Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30484
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   3.3  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 686 QEGPSAFQSSPVVPVSAFQSRSGQGLKNEPIFSMFCER 573
           Q  P+ F S+P+VP  A+         +EP+ S   E+
Sbjct: 84  QTQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEK 121


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 715 PWNRPRKVTPRKALLPFNLPRLSRSAPSN 629
           PW + +K T + +     LPR  R+A +N
Sbjct: 116 PWMKEKKTTRKSSQQENGLPRRLRTAYTN 144


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 701 PESNSQEGPSAFQSSPVVPVSAFQSRSGQ 615
           PESN+   PS   +   +   +F SRS Q
Sbjct: 718 PESNNGSSPSVLNAIEKLIEKSFDSRSRQ 746


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 409 YHVSANVEYARYYVSFIIQFQFHRALCQLAGEHE 510
           Y+    VE+ ++Y  FI+ F  +  L  L  +++
Sbjct: 140 YYEQYAVEFFQFYAQFIVYFLIYAVLEMLLQKYK 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,092
Number of Sequences: 336
Number of extensions: 3201
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)