Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30484
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    32   0.096
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.1  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   4.8  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   4.8  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.4  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = +1

Query: 334  KLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHEP 513
            KL E +Q +    ++       A +  +  + +Y ++Y+  ++QF+    L +L G+ + 
Sbjct: 897  KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQS 956

Query: 514  G 516
            G
Sbjct: 957  G 957


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 298 KTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYARYYVSFIIQF-QF 474
           +TL  +YN H W     +  ++ P+N    + D +    V+A  +   +   F  +F Q+
Sbjct: 645 ETLKPEYNPHSWNSNASVIFLDQPINTGFSNGDDSVLDTVTAGKDVYAFLNLFFAKFPQY 704

Query: 475 HRALCQLAGEHEPG 516
                 +AGE   G
Sbjct: 705 AHLDFHIAGESYAG 718


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 309 RQRLPSEHTVSEQVQGICD 253
           RQ+ PS+HT S  ++G CD
Sbjct: 138 RQQKPSDHTYSILLKGFCD 156


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 607  LSPWPERDWKALTGTTGE 660
            L PW   +WKAL G T E
Sbjct: 1364 LVPWDSANWKALHGVTHE 1381


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 111 ASWKPWFAPSLNTTGWSR 58
           A W  W  PS+  T WSR
Sbjct: 46  ARWYEWIDPSIKKTEWSR 63


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 704 APESNSQEGPSAFQSSPVVPVSAFQSRSG 618
           APE  S    + F S+P + VS F S+ G
Sbjct: 159 APEMGSLPSNTEFTSTPTLGVSEFPSKHG 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,875
Number of Sequences: 5004
Number of extensions: 51246
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)