Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30484
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    29   5.0  
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851...    28   6.6  
09_02_0547 + 10463934-10464060,10464230-10464300,10464728-10464907     28   8.7  

>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  PDHPPRDGAHPILPAVPGPARCVQGRSEPRFP 105
           P HPP+  +  +  A   PARC  G  +P  P
Sbjct: 41  PPHPPKASSEALPCAASPPARCRGGDHQPPHP 72


>07_01_1005 +
           8509777-8509968,8510059-8510205,8510326-8510544,
           8510652-8510761,8511337-8511391,8511447-8511631,
           8512537-8512599,8513713-8513782,8514159-8514242,
           8515925-8516159,8516213-8516517
          Length = 554

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 359 WSRPSIELRTTSTPQPSTMCLPTSNT 436
           WS PS   R TS+P  S  C P + T
Sbjct: 495 WSPPSPHPRATSSPSTSPRCSPRAET 520


>09_02_0547 + 10463934-10464060,10464230-10464300,10464728-10464907
          Length = 125

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 350 YKAWSRPSIELRTTSTPQPSTMCLPT 427
           YKA    ++E+R TS P    M LPT
Sbjct: 55  YKAMFNAAMEIRITSAPMAQPMVLPT 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,263,283
Number of Sequences: 37544
Number of extensions: 417651
Number of successful extensions: 1546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)