Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30484
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 2e-26
SB_6324| Best HMM Match : MCM (HMM E-Value=0) 114 8e-26
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0) 112 3e-25
SB_17710| Best HMM Match : Peptidase_M2 (HMM E-Value=8.8e-06) 101 5e-22
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_43454| Best HMM Match : Peptidase_M2 (HMM E-Value=0.0041) 90 2e-18
SB_53646| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_41908| Best HMM Match : Pep_M12B_propep (HMM E-Value=1.2e-07) 31 0.96
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 28 8.9
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10) 28 8.9
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 116 bits (279), Expect = 2e-26
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = +2
Query: 5 YFQTTHHEMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGLATGD 184
Y TTHHE+GHIQYYLQY DQP +R GAN GFHEAVGDT++LSV +P HL+ +GL
Sbjct: 356 YLVTTHHELGHIQYYLQYWDQPFEYRTGANPGFHEAVGDTLSLSVDTPTHLKLIGLLDAV 415
Query: 185 AEDEQTEINQLYKMGIDKIAFLP 253
+ D +++IN L KM + K+AFLP
Sbjct: 416 SNDSKSDINALMKMALRKVAFLP 438
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYA 438
+ +D +R+ VF ++YN +WKLR + QG++PPV RTE+DFD AKYH+ N Y
Sbjct: 441 FLIDQWRWKVFSGDITSDNYNREWWKLRTKYQGIKPPVCRTENDFDPGAKYHIPGNTPYI 500
Query: 439 RYYVSFIIQFQFHRALCQLAG 501
+S + AL Q+ G
Sbjct: 501 SDMLSLGKSKPWPLALEQMTG 521
>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
Length = 1592
Score = 114 bits (274), Expect = 8e-26
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +2
Query: 2 EYFQTTHHEMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGLATG 181
+Y TTHHE+GHIQY+LQY QP +R GAN GFHEAVGDT++LSV +P HL R+GL
Sbjct: 11 DYLVTTHHELGHIQYFLQYAHQPYEYRTGANPGFHEAVGDTLSLSVDTPAHLHRIGLLDA 70
Query: 182 DAEDEQTEINQLYKMGIDKIAFLP 253
+ + +++IN L KM + K+AFLP
Sbjct: 71 VSNNTESDINALMKMALSKVAFLP 94
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/84 (39%), Positives = 51/84 (60%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYA 438
+ +D +R+ VFR + P++YN +W+LR + QG++PPV RTE+DFD AKYH+ AN Y
Sbjct: 97 FLIDQWRWRVFRGEITPQNYNRKWWELRTKYQGIKPPVCRTENDFDPGAKYHIPANTPYI 156
Query: 439 RYYVSFIIQFQFHRALCQLAGEHE 510
+ + +AL + G E
Sbjct: 157 SAMLKLGKSKPWPQALKAMTGTEE 180
>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
Length = 663
Score = 112 bits (269), Expect = 3e-25
Identities = 50/79 (63%), Positives = 61/79 (77%)
Frame = +2
Query: 17 THHEMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGLATGDAEDE 196
THHEMGHI Y+L+Y DQP ++RDGAN FHEA+GDTIALSV +P+HL +V L ED+
Sbjct: 367 THHEMGHIYYFLKYWDQPYIYRDGANPAFHEALGDTIALSVDTPRHLVKVKLLDEYMEDK 426
Query: 197 QTEINQLYKMGIDKIAFLP 253
+ EIN L KM + KIAFLP
Sbjct: 427 EAEINALMKMALSKIAFLP 445
Score = 88.6 bits (210), Expect = 5e-18
Identities = 35/85 (41%), Positives = 58/85 (68%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYA 438
Y L+ +R+ V+ + +YN +W+LR + QGV PP++R E FD +K+H++AN Y
Sbjct: 448 YLLEKWRWQVYTGEIDSSEYNKKWWELRVKHQGVRPPISRDETTFDPGSKFHIAANARYI 507
Query: 439 RYYVSFIIQFQFHRALCQLAGEHEP 513
+Y++S I+QFQ H+ +C +AG +EP
Sbjct: 508 QYFLSRILQFQLHKTVCDIAGINEP 532
>SB_17710| Best HMM Match : Peptidase_M2 (HMM E-Value=8.8e-06)
Length = 179
Score = 101 bits (243), Expect = 5e-22
Identities = 46/75 (61%), Positives = 57/75 (76%)
Frame = +2
Query: 29 MGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGLATGDAEDEQTEI 208
MGHI Y+L+Y DQP ++RDGAN FHEA+GDTIALSV +P+HL +V L ED++ EI
Sbjct: 1 MGHIYYFLKYWDQPYIYRDGANPAFHEALGDTIALSVDTPRHLVKVKLLDEYMEDKEAEI 60
Query: 209 NQLYKMGIDKIAFLP 253
N L KM + KIAFLP
Sbjct: 61 NALMKMALSKIAFLP 75
Score = 88.6 bits (210), Expect = 5e-18
Identities = 35/85 (41%), Positives = 58/85 (68%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYA 438
Y L+ +R+ V+ + +YN +W+LR + QGV PP++R E FD +K+H++AN Y
Sbjct: 78 YLLEKWRWQVYTGEIDSSEYNKKWWELRVKHQGVRPPISRDETTFDPGSKFHIAANARYI 137
Query: 439 RYYVSFIIQFQFHRALCQLAGEHEP 513
+Y++S I+QFQ H+ +C +AG +EP
Sbjct: 138 QYFLSRILQFQLHKTVCDIAGINEP 162
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 93.1 bits (221), Expect = 2e-19
Identities = 40/85 (47%), Positives = 54/85 (63%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYA 438
Y +D +R+ V + P +YN +W++R QGV+PPV R E DFD AK+H+ +N Y
Sbjct: 776 YLVDQWRWKVLAGEISPSNYNSAWWRMRTLYQGVKPPVARNESDFDPGAKFHIVSNSPYI 835
Query: 439 RYYVSFIIQFQFHRALCQLAGEHEP 513
Y+VS I+QFQFHRALC L P
Sbjct: 836 GYFVSLILQFQFHRALCNLVKHTGP 860
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 14 TTHHEMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGL 172
T HHEMGH +Y+L Y+DQP +R+GAN GFHEA+GDTIALSV +PKHL VGL
Sbjct: 497 TIHHEMGHCEYFLAYKDQPYAYRNGANPGFHEAIGDTIALSVVTPKHLNSVGL 549
>SB_43454| Best HMM Match : Peptidase_M2 (HMM E-Value=0.0041)
Length = 192
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +2
Query: 14 TTHHEMGHIQYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGL 172
TTHHE+GHIQY+LQY QP +R GAN GFHEAVGDT++LSV +P HL R+GL
Sbjct: 126 TTHHELGHIQYFLQYAHQPYEYRTGANPGFHEAVGDTLSLSVDTPAHLHRIGL 178
>SB_53646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 61.7 bits (143), Expect = 6e-10
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +1
Query: 259 YTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEY 435
Y +D +R+ V + P +YN +W++R QGV+PPV R E DFD AK+H+ +N Y
Sbjct: 15 YLVDQWRWKVLAGEISPSNYNSAWWRMRTLYQGVKPPVARNESDFDPGAKFHIVSNSPY 73
>SB_16138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 256 AYTLDLFRYGVFRRKTLPEDYNCHYWKLREQLQGVEPPVNR---TEDDFDAAAKYHVSAN 426
A +DL RY V T P Y ++ G P TED+FD ++ HV N
Sbjct: 20 AVIVDLLRYRVLSGYTPPRRYKYGLVAAEARIPGCRGPRGGRGLTEDNFDPSSITHVCNN 79
Query: 427 VEYA 438
YA
Sbjct: 80 TPYA 83
>SB_41908| Best HMM Match : Pep_M12B_propep (HMM E-Value=1.2e-07)
Length = 258
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 292 RRKTLPEDYNCHYWKLREQLQGVEPPVNRTEDDFDAAAKYH 414
RR T PE+ N HY+K+R + + V +++D A+ H
Sbjct: 46 RRSTGPEEPNFHYFKVRAMGKDLHLKVTKSDDLLSEQARVH 86
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 223 LIKLIDLCLFVLGIARGQSDPTQMFRRRHREGYRVPDRFVET--LVRSVPEHN 71
++ L +LC ++ +AR DP ++F+ E Y + +E L R E N
Sbjct: 910 IVLLQELCNMIIEMARTYLDPAEIFKSEIEEAYEKVKKAIENCMLFRDTFEEN 962
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 301 TLPEDYNCHYWKLREQLQG 357
T+ +DY+C YWK R QG
Sbjct: 114 TIEQDYSCSYWKGRVPRQG 132
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 334 KLREQLQGVEPPVNRTEDDFDAAAKYHVSANVEYAR 441
KLR +L+ ++ +N+T+ D + K +S EY++
Sbjct: 11 KLRGKLKSIQAELNKTQQDLEEKDKDFLSQTKEYSK 46
>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
Length = 1514
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 394 DAAAKYHVSANVEYARYYVSFI 459
D A+ YH++ NVEY+ +V F+
Sbjct: 1057 DHASDYHLTDNVEYSAMFVEFL 1078
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,327,358
Number of Sequences: 59808
Number of extensions: 447198
Number of successful extensions: 1402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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