Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30484
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 144 RRNICVGSDWPRAMPRTNRQRSI 212
           RRN   GS  PR  PR++R +S+
Sbjct: 55  RRNPGPGSKGPRDFPRSHRFKSL 77


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 223 DGNRQDRIPTVAYTLDLFRYGV 288
           D   +D    +AY  D+FRYG+
Sbjct: 314 DIRNEDCGSAIAYVSDVFRYGL 335


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 546 IYQSVAAGNALAKHAEDGFV 605
           ++    AG ALA  AE+G+V
Sbjct: 3   LHNKTLAGKALAFIAEEGYV 22


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 546 IYQSVAAGNALAKHAEDGFV 605
           ++    AG ALA  AE+G+V
Sbjct: 3   LHNKTLAGKALAFIAEEGYV 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,847
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)