Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30484
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17540.1 68414.m02157 protein kinase-related similar to serin...    29   2.4  
At2g35670.1 68415.m04375 transcription factor, putative / fertil...    29   3.2  
At4g16930.1 68417.m02553 disease resistance protein (TIR-NBS-LRR...    28   5.5  
At5g57015.1 68418.m07116 casein kinase, putative similar to case...    28   7.3  
At3g23960.1 68416.m03010 F-box family protein contains F-box dom...    28   7.3  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    28   7.3  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    28   7.3  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    27   9.6  

>At1g17540.1 68414.m02157 protein kinase-related similar to
           serine/threonine protein kinase Fen [Lycopersicon
           esculentum] GI:1809259
          Length = 733

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 10  PDHPPRDGAHPILPAVPGPARCV---QGRSEP 96
           P HPP    HP + + PGP        GRS P
Sbjct: 178 PQHPPHPSKHPSMMSDPGPTSSTSSESGRSSP 209


>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 41  QYYLQYRDQPVVFRDGANQGFHEAVGDTIALSVSSPKHLRRVGLATGDAEDEQTEINQLY 220
           Q+Y     QP+ F    +    E   D  AL +S    L R+    G +++E+  +  L+
Sbjct: 484 QFYHSQTMQPITFEQVMSNEDSENETDDYALDISERLRLERL---VGVSKEEKRYM-YLW 539

Query: 221 KMGIDKIAFL-PSHIPWTCSD 280
            + + K   +   H+PW C +
Sbjct: 540 NIFVRKQRVIADGHVPWACEE 560


>At4g16930.1 68417.m02553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +2

Query: 269 TCSDTVCSEGRRCRKXXXXXXXXXXXXYKAWSRPSIELRTTSTPQPSTMCLPTSNTPD 442
           TC +    E +RCRK             + W   +  + T S   P+ +  P+S+  D
Sbjct: 28  TCKNKTDDEKQRCRKALADVANMAGEDSRNWCNEANMIETISNDVPNKLITPSSDLGD 85


>At5g57015.1 68418.m07116 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158; contains protein kinase domain,
           Pfam:PF00069
          Length = 435

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 728 GKLNSLEPAPESNSQEGPSAFQSSPVVPVSAFQSRSGQGLKNEPI 594
           G L+S  P   S+S    SA  S  V      + R+G GL+N P+
Sbjct: 355 GNLSSRGPMMPSSSLFAQSAGSSRRVTSEELQRCRTGAGLRNSPV 399


>At3g23960.1 68416.m03010 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 280 IGTGPGYMRR*ECDLVYSHLIKLIDLC----LFVLGIARGQSDPTQ 155
           +GTG    R  +C L Y H +K  ++C    L+ L +  G S PT+
Sbjct: 211 LGTGKLSWRMIKCCLNYQHPLKNSEICINGVLYYLAMVNGSSWPTR 256


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 367 PVNRTEDDFDAAAKYHVSANVEYA--RYYVSFIIQ 465
           P NR+++ +DAA K+ +  N+ +A  +  V FI+Q
Sbjct: 411 PYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQ 445


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 367 PVNRTEDDFDAAAKYHVSANVEYA--RYYVSFIIQ 465
           P NR+++ +DAA K+ +  N+ +A  +  V FI+Q
Sbjct: 411 PYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQ 445


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 143 TTPRGLSCPRPLRGNLGSLRP*TQRAGPGTAGSI 42
           + P   S P P  G  GS  P T   GPG AGS+
Sbjct: 220 SAPSPGSAPAP--GTSGSTTPGTAAGGPGNAGSL 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,751
Number of Sequences: 28952
Number of extensions: 297501
Number of successful extensions: 938
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)