Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30482
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.39 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   2.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   4.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   8.4  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 205 PPQPDKQAEDVYEFKEPNHSNWSCTTKRKKGL 300
           PP+P+   ED+    E NHS    T  +K+ L
Sbjct: 219 PPEPEDYVEDLVGHIEVNHSAPITTCNKKQHL 250


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 372 RFLHSTISITLMCIYWGKYRRI 307
           +F ++     ++CI+ GKYR I
Sbjct: 155 QFYYTYFLCVIVCIFRGKYRNI 176


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 371 LRRSLKTASFDFKITLAVAVQRFR 442
           LRR+      +++IT+AV + +FR
Sbjct: 169 LRRAFDKEGKNWEITMAVPIAKFR 192


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 673 ECSSSSRTFPAKSSMSSLNLDTFTLLRVSLLI 578
           +C++   T    SS  S N DT+  L    L+
Sbjct: 33  QCNTDEETCTRISSTVSRNTDTYPTLETCRLV 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,334
Number of Sequences: 336
Number of extensions: 3286
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)