Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30482
(781 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.75
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 1.3
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 2.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 27 4.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 7.0
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 26 7.0
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 26 7.0
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 9.2
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 29.1 bits (62), Expect = 0.75
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -2
Query: 369 FLHSTISITLMCIYWGKYRRIFDESFFSFRRAAPVRMVRF 250
FL+S +S + C+ + Y F S ++ +AAP R VRF
Sbjct: 40 FLYSPLSASYYCLLYASYTWNFVLSDEAYFQAAPGRSVRF 79
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 775 VNFPQFPTWGTSKGLVHFTAFSAFYPSSLAHPLKECSSSSRTFPAKSSMSSLNLD---TF 605
+ PQ T + + ++ +T AF+ +SL L S S P+K S+S+ D TF
Sbjct: 550 LGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSIAIPSKRSVSATIKDESKTF 609
Query: 604 TLLR 593
LL+
Sbjct: 610 ELLK 613
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 178 ATMSAAPAEPPQPDKQAEDVY-EFKEPNHSNWSCTTKRKK 294
AT+S ++P QP+ ED+ +E H N TK K
Sbjct: 155 ATLSFVASKPSQPEGNLEDIQTSSQEEEHDNEKDKTKESK 194
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 727 HFTAFSAFYPSSLAHPLKECSSSSRTFPAKSSMSS 623
++ + S+F S+ + P+ SSS T P+KS+ SS
Sbjct: 204 NWNSSSSFTSSTSSTPISSSYSSSGTLPSKSNKSS 238
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 775 VNFPQFPTWGTSKGLVHFTAFSAFYPSSLAHPLKE 671
+ + PTW T+ H F YP L HP E
Sbjct: 685 IRYRLLPTWYTAFYNSHTHGFPILYPQFLMHPEDE 719
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = -1
Query: 748 GTSKGLVHFTAFSAFYPSSLAHPLKECSSSSRTFPAKSS-----MSSLNLDTFTLLRVSL 584
GT G FT+ FY +S P SS S + SS +S TFT
Sbjct: 388 GTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGS 447
Query: 583 LIFSRSEPFESGA 545
F+ S PF S +
Sbjct: 448 ATFTSSPPFYSNS 460
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = -1
Query: 748 GTSKGLVHFTAFSAFY------PSSLAHPLKECSSSSRTFPAKSSMSSLNLDTFTLLRVS 587
GT G FT+ FY P+S+ + +SS+ ++ + S+ ++ T+T
Sbjct: 334 GTGTGSATFTSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTSI-TYTGTGTG 392
Query: 586 LLIFSRSEPFESGA 545
F+ S PF S +
Sbjct: 393 SATFTSSPPFYSNS 406
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 472 KVPKKTL-KYVYSVGRRLIPRRWQFGPHFRR 561
K PK T+ ++V SVG + + W FG H R
Sbjct: 312 KNPKDTVSQFVQSVGTPAMQQHWTFGFHICR 342
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 712 SAFYPSSLAHPLKECSSSSRTFPAKSSMSSLNLDTFTLLRVSLLIFSRS 566
S+ Y S + PL S +S FP+K +++S +L + VSL F+ S
Sbjct: 182 SSLYVSPSSQPLDRFSPAS--FPSKETLTSSSLSSSVPRSVSLSNFADS 228
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 QAEDVYEFKEP-NHSNWSCTTKRKKGLIEYSTIFPP 327
Q ED+ F+ +HS W + ++ I Y T F P
Sbjct: 523 QIEDMRNFRSRLDHSTWKSISLVERARIHYLTAFKP 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,710
Number of Sequences: 5004
Number of extensions: 58833
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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