Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30482
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0433 + 3282195-3285185 32 0.59
08_02_0897 - 22362136-22363698 30 1.8
05_03_0467 - 14366969-14367742,14368335-14368754,14370339-143704... 29 3.1
03_05_0490 + 24866418-24867008 29 3.1
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 29 3.1
07_03_0664 + 20462600-20463005,20464270-20464343 29 4.1
11_01_0133 + 1121392-1122731,1123417-1123858 29 5.5
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 5.5
05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751 28 7.2
08_02_0302 + 15546969-15547511,15549514-15549750,15550046-155501... 28 9.6
06_03_0193 + 17766309-17766435,17766668-17766702 28 9.6
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 9.6
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 28 9.6
>01_01_0433 + 3282195-3285185
Length = 996
Score = 31.9 bits (69), Expect = 0.59
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 772 NFPQFPTWGTSKGLVHFTAFSAFYPSSLAH--PLKECSSSSRTFPAKSSMSSLNLDTFTL 599
NFP P K V T FS + PSS+++ LKE S S+ FP + S L + L
Sbjct: 316 NFP--PNSSLIKLHVSGTKFSGYIPSSISNLTDLKELSLSANNFPTELPSSLGMLKSLNL 373
Query: 598 LRVSLLIFSRSEP 560
VS L S P
Sbjct: 374 FEVSGLGLVGSMP 386
>08_02_0897 - 22362136-22363698
Length = 520
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Frame = -2
Query: 426 ATARVILKSKDAVLRDLRRFL---HST-----ISITLMCIYWGKYRRIFDESFFSFRRAA 271
A AR++LK+ DAV D R H+T I+ + YW + RRI FS RR A
Sbjct: 85 AMARLVLKTHDAVFIDRPRTASRKHTTYGYADITWSPYGAYWRQARRICVTELFSARRVA 144
Query: 270 PVRMVRFFEL 241
+R E+
Sbjct: 145 SFEHIRADEV 154
>05_03_0467 -
14366969-14367742,14368335-14368754,14370339-14370496,
14370571-14370664,14371536-14371649,14371794-14371985,
14372095-14372176,14372280-14372471,14372773-14373371
Length = 874
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +1
Query: 4 SPSKKPRPMPTTCHQGRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAAT 183
SP ++PRP PT+ R + K LH++++ SL++ D + A
Sbjct: 25 SPRRRPRPAPTSETLRRRLLRKGVSPTPKILHALRKKEALKSLRRARKDTAAAAAAAEAA 84
Query: 184 MSAAPAE 204
+A P E
Sbjct: 85 SNALPRE 91
>03_05_0490 + 24866418-24867008
Length = 196
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 166 MLPAATMSAAPAEPPQPDKQAEDVYEFKEPNHS 264
M AA S+AP PPQP + A D +EP ++
Sbjct: 1 MATAAASSSAPPPPPQPAEPAADPPAKEEPQNT 33
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +1
Query: 16 KPRPMPTTCHQGRDFDLNEIRSE-LKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMSA 192
+P P T G+D ++ R E + G HS +DH + P L L A ++
Sbjct: 558 RPAPGQTVRLMGKDLAVSTTRGEYVSGTHSYTEDHPTKLFLELPRQGRPYLSLQAQSVPN 617
Query: 193 APAEPPQPDK 222
A P +
Sbjct: 618 VSANSASPSQ 627
>07_03_0664 + 20462600-20463005,20464270-20464343
Length = 159
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 172 PAATMSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCT 279
P +T S+A + P P A+D+ + H W C+
Sbjct: 25 PVSTFSSALSPPKSPRPMADDIQCYCFETHRRWRCS 60
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 142 PHDKTSRLMLPAATMSAAPAEPPQPDK-QAEDVYEFKEPN 258
P D T+ P + + P PPQPDK + E + +EPN
Sbjct: 147 PPDATAPPPPPTSVAALPPPPPPQPDKRRREPQCQEQEPN 186
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 79 SELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMSAAPAEPPQPD---KQAEDVYEFK 249
S++ L V D +E+ D H +P T + P+PD K EDV +
Sbjct: 490 SDISFLKLVPDDAEETLRPSDSHPLEVSACIPDRTSGMEIEDVPEPDLIEKFKEDVEKLT 549
Query: 250 EPNHSN 267
EP N
Sbjct: 550 EPETEN 555
>05_01_0542 + 4729099-4729419,4730837-4731086,4731387-4731751
Length = 311
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 19 PRPMPTTCHQGRDF---DLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMS 189
PRP+ T H D D +E + + L S ++ D+ + +D H+ + PA
Sbjct: 81 PRPVWGTHHHAADAHDDDHDEQAALEQELESEDEEVDDDA--EDEHEHETEDATPAEPAM 138
Query: 190 AAPAEPPQPDKQAEDVYEFKE 252
A PP P K E KE
Sbjct: 139 NKAAAPPAPPKDTERQLSKKE 159
>08_02_0302 +
15546969-15547511,15549514-15549750,15550046-15550188,
15550616-15550706,15550791-15550931
Length = 384
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 49 GRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMSAAPAEPPQPDKQA 228
G D++L+ ++ L+S K + S+ D K + P+ P++P P+++
Sbjct: 283 GPDYNLHIQPRSVENLNSTKDLENIKSMILDHLSKIEHV--PSTQFHDRPSDPEAPEQEE 340
Query: 229 EDVYEFKEPNHSN-WS 273
ED+ + + P S WS
Sbjct: 341 EDM-DKRPPQRSRLWS 355
>06_03_0193 + 17766309-17766435,17766668-17766702
Length = 53
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 163 LMLPAATMSAAPAEPPQPDKQAEDV 237
+ +PA+ +AAPA+PP P ++ V
Sbjct: 20 IAMPASASAAAPAQPPAPAPSSDGV 44
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 238 YEFKEPNHSNWSCTTKRKKGLIEYSTIFPPVNT 336
YEFK NH +W T K K GL + + VN+
Sbjct: 301 YEFKT-NHEDWVNTVKPKLGLDTSTRVLQAVNS 332
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 145 HDKTSRLMLPAATMSAAPAEPPQPDKQAEDVYEFKEPNHSNWSC-TTKRKKGLIEYS 312
H + L++PAA SA + P + + ++ ++ WSC T KGL+ S
Sbjct: 160 HSILAMLLIPAAIFSALLSSPDKSKAKPGAFASSQKDWYTGWSCMKTLTSKGLVAKS 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,237,878
Number of Sequences: 37544
Number of extensions: 394306
Number of successful extensions: 1522
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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