Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30482
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)                31   1.0  
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)                   29   4.2  
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_37697| Best HMM Match : Methyltransf_8 (HMM E-Value=4.7e-18)        28   7.4  
SB_32148| Best HMM Match : Methyltransf_8 (HMM E-Value=0.00028)        28   7.4  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)
          Length = 392

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
 Frame = +1

Query: 55  DFDLNEIRSELKGLHSVKQDHDESSLKQDPH-DKTSRLMLPAATMSAAPAEPPQPDK-QA 228
           DF ++E   E + LH V   HD+   K+    +K    M         P   P  D+  +
Sbjct: 196 DFQVDEESEEFRLLHPVLSKHDKGKQKRRKEAEKAQEKMFSQFDEVEEPEGKPSDDESSS 255

Query: 229 EDVYEFKEPNHSNWSCTTKRKKGLIEYSTIFPPVNTHQRYR 351
           +D + ++E        T K++K ++     F  +   + YR
Sbjct: 256 DDEHTWREEQRKQLK-TKKKEKQMVPNKLKFYELKGGEEYR 295


>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
          Length = 909

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 436 ISEGLVLSSQVDKVPK-KTLKYVYSVGRRLIPRRWQFGPHFRRVHS 570
           ++E L L+  ++ +PK +    +YS+    + RR ++G HF+ VHS
Sbjct: 332 LAEPLGLNVMLETLPKFQKQTPLYSIPCNQVFRRDEYGEHFKAVHS 377


>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 82  ELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMSAAPAEPPQPDKQAED 234
           E K   + + D++    K  P+D+   +  P AT + AP  PP P K  E+
Sbjct: 712 ENKPAETKQADNEPVFDKSKPNDEDKEIPPPPATAAKAP-PPPPPRKDVEE 761


>SB_37697| Best HMM Match : Methyltransf_8 (HMM E-Value=4.7e-18)
          Length = 311

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +1

Query: 10  SKKPRPMPTTCHQGRDFDLNEIR--SELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAAT 183
           +K+ + + T      D  L+ I   SE  GL   K +     +KQ   D  S   +    
Sbjct: 59  TKRKKTLGTDSLANSDSILSNIEADSEAVGLGKTKNN---KRIKQG--DNESNTKMGHQV 113

Query: 184 MSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRKK 294
           MS  P +  + +   +D YE K  N  +   T K+KK
Sbjct: 114 MSEKPPKAIKGESYKKDEYELKSGNSQSHKKTRKKKK 150


>SB_32148| Best HMM Match : Methyltransf_8 (HMM E-Value=0.00028)
          Length = 268

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +1

Query: 10  SKKPRPMPTTCHQGRDFDLNEIR--SELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAAT 183
           +K+ + + T      D  L+ I   SE  GL   K +     +KQ   D  S   +    
Sbjct: 61  TKRKKTLGTDSLANSDSILSNIEADSEAVGLGKTKNN---KRIKQG--DNESNTKMGHQV 115

Query: 184 MSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRKK 294
           MS  P +  + +   +D YE K  N  +   T K+KK
Sbjct: 116 MSEKPPKAIKGESYKKDEYELKSGNSQSHKKTRKKKK 152


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/88 (20%), Positives = 36/88 (40%)
 Frame = +1

Query: 4   SPSKKPRPMPTTCHQGRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAAT 183
           +PS  P P P++ +   +   N I +       +   H  S+    PH  ++    P+  
Sbjct: 506 NPSSDPSPNPSS-NPSSEPSPNPISNPSISTSPISNPHPSSN--PSPHPSSNPSSEPSPN 562

Query: 184 MSAAPAEPPQPDKQAEDVYEFKEPNHSN 267
            S+ P+  P P+  ++    F   + S+
Sbjct: 563 PSSNPSSDPSPNPSSDPSLSFSPSSSSS 590


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,777,649
Number of Sequences: 59808
Number of extensions: 427997
Number of successful extensions: 2190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)