Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30482
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    32   0.40 
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    28   8.6  

>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 HDKTSRLMLPAATMSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRK-KGLIEYST 315
           H KT  L+         P E  +P + AE +Y  + P    WS   +   K L+E  T
Sbjct: 799 HRKTEDLLREERQKEQKPGEIEEPQQPAESLYSTRTPQQEGWSSAAQEAYKLLVECGT 856


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 HDKTSRLMLPAATMSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRK-KGLIEYST 315
           H KT  L+         P E  +P + AE +Y  + P    WS   +   K L+E  T
Sbjct: 799 HRKTEDLLREERQKEQKPGEIEEPQQPAESLYSTRTPQQEGWSSAAQEAYKLLVECGT 856


>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
 Frame = +1

Query: 7   PSKKPRPMPTTCH-QGRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAAT 183
           PS KP+  P     + +D    E+  EL    S    H E  +K  P +K      P  T
Sbjct: 424 PSTKPKRAPIVWDDKPKDSTAKELPKELPKAKS----HFEFKVK--PIEKKDAS--PPKT 475

Query: 184 MSAAPAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRK 291
            S + A PP PD   +  Y+F   +       TK K
Sbjct: 476 TSTSSASPPNPDPAMKQKYKFVPTSKKQKLTETKNK 511


>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
           protein protein16, isoform d protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 205 PPQPDKQAEDVYEFKEPNHSNWSCTTKRKKGLIEYSTIFPPVNT 336
           PP P   AE +     P+    S TT   + L +   ++PP +T
Sbjct: 110 PPSPPPVAETIQHQPHPSQQQPSTTTISSRQLYKSQLLYPPGST 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,883
Number of Sequences: 27780
Number of extensions: 327809
Number of successful extensions: 1128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)