Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30482
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g10175.1 68415.m01058 hypothetical protein                          30   1.5  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    30   2.0  
At5g54470.1 68418.m06783 zinc finger (B-box type) family protein...    28   6.0  
At1g71970.1 68414.m08319 expressed protein                             28   6.0  
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom...    28   6.0  
At1g17750.1 68414.m02197 leucine-rich repeat transmembrane prote...    28   6.0  
At2g05890.1 68415.m00638 hypothetical protein includes At2g05890...    28   8.0  

>At2g10175.1 68415.m01058 hypothetical protein
          Length = 122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 157 SRLMLPAATMSA--APAEPPQPDKQAEDVYEFKEPNHSNWSCTTKRKKGLIEYSTI 318
           S L+ P +T  A  + A P +P  Q   + + +E  H N+S TT+  +GL   S +
Sbjct: 63  STLLQPRSTARANHSIATPEKPAAQFHSIAKPEESPHQNYSITTRSPEGLSARSAL 118


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
 Frame = +1

Query: 55  DFDLNE----IRSELKGLHSVK-----QDHDESSLKQDPHDKTSRLMLPAATMSAAPAEP 207
           D+ LN+    I  E K +H+V       D D SS+  +P  +  + +   A  +  P  P
Sbjct: 354 DYPLNDEEPRIHQETKIVHAVSPSDHSNDEDRSSISSEPRKQVVKSVRSRAQGAKVPPPP 413

Query: 208 PQPDKQAEDVYEFKEPNHS 264
           P       +++E+   N +
Sbjct: 414 PPEKSNLLELFEYSNVNRA 432


>At5g54470.1 68418.m06783 zinc finger (B-box type) family protein
           similar to unknown protein (pir||T05755)
          Length = 215

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 49  GRDFDLNEIRSELKGLHSVKQDHDESSLKQDPHDKTSRLMLPAATMSAAP 198
           GRD +LN+   E+ G +   + +DE S + +  ++    ++PAA     P
Sbjct: 87  GRDQNLNQ-EEEIIGCNDGAESYDEESDEDEEEEEVENQVVPAAVEQELP 135


>At1g71970.1 68414.m08319 expressed protein
          Length = 225

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 778 PVNFPQFPTWGTSKGLVHFTAFSAFYPSSLAHPLKECSSSSRTFPAKSSMSS 623
           P+NFP   +  + + L   ++FS+F           CSSSS  FP  S ++S
Sbjct: 15  PINFPAKSSISSRRSLSSSSSFSSF---------SSCSSSSLVFPGDSPLNS 57


>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 506

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 97  HSVKQDHDESSLKQDPHDKT--SRLMLPAATMSAAPAEPPQPDKQAEDVYEFKE 252
           H+V Q H  S+ +    D    SR +    T SAAP  PP+ D + ED+  FK+
Sbjct: 430 HNVPQ-HSSSASESSYDDLLGQSRNLSLNPTASAAPVTPPKKDDKPEDIL-FKD 481


>At1g17750.1 68414.m02197 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor-like protein kinase
           INRPK1 GI:1684913 from [Ipomoea nil]
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 728 SLYRFFRLLP--IKSCSSSERMFVIKPDFSGEIVDEFS*LRH 609
           SL  F  LLP  + +C+S E + +   DFSGE+ D F  L++
Sbjct: 108 SLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVPDIFGSLQN 149


>At2g05890.1 68415.m00638 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 456

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 342 LMCIYWGKYRRIFDESFFSFRRAAPVRMVRFFEL 241
           L CI WGKY  I D++         V ++RF ++
Sbjct: 148 LACILWGKYAEIVDKACQESTDGIVVCLIRFAKI 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,038
Number of Sequences: 28952
Number of extensions: 316922
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)