Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30481
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   3.8  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   3.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 103 TTSNNFWHPVAGYETFNFMTAVNPVEPR 20
           +TSNN WH   G  + N     NP + R
Sbjct: 370 STSNNRWHNNNGNNSNNHWRKNNPNDNR 397


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRI 125
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRI 125
           M ++   P+TG Q + +VV  HKL++
Sbjct: 54  MYIHPDSPSTGEQWMQKVVSFHKLKL 79


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 207 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 79
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 207 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 79
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 207 QRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGI 79
           Q H  H P IH     P+L       +      +PP+ ++S I
Sbjct: 88  QLHSHHGPPIHHQIRPPILHDTQPMCESLN--TQPPVTSSSNI 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,089
Number of Sequences: 336
Number of extensions: 3300
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)