Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30481
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 162 3e-41
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 162 4e-41
SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1 |S... 26 4.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 7.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 7.0
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.2
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 9.2
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 162 bits (394), Expect = 3e-41
Identities = 84/125 (67%), Positives = 95/125 (76%)
Frame = +2
Query: 260 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 439
RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+IPGLTD VP+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131
Query: 440 RLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAA 619
RLGPKRASKIR+ FNLSKEDDVR P+ KE KP KAPKIQRLVTP +
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKKPYTKAPKIQRLVTP-RTLQ 188
Query: 620 VERHR 634
+RHR
Sbjct: 189 HKRHR 193
Score = 101 bits (242), Expect = 9e-23
Identities = 44/68 (64%), Positives = 53/68 (77%)
Frame = +3
Query: 48 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 228 FPMKQGVL 251
FPM QGVL
Sbjct: 61 FPMFQGVL 68
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 162 bits (393), Expect = 4e-41
Identities = 83/125 (66%), Positives = 95/125 (76%)
Frame = +2
Query: 260 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 439
RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+IPGLTD VP+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131
Query: 440 RLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAA 619
RLGPKRASKIR+ FNLSKEDDVR P+ KE KP KAPKIQRLVTP +
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPK--KEGKKPYTKAPKIQRLVTP-RTLQ 188
Query: 620 VERHR 634
+RHR
Sbjct: 189 HKRHR 193
Score = 101 bits (242), Expect = 9e-23
Identities = 44/68 (64%), Positives = 53/68 (77%)
Frame = +3
Query: 48 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 228 FPMKQGVL 251
FPM QGVL
Sbjct: 61 FPMFQGVL 68
>SPAC14C4.03 |mek1||Cds1/Rad53/Chk2 family protein kinase Mek1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 410 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACS 532
P T+ +V RL +S + + N+ K +DV V SN C+
Sbjct: 31 PQYTEDDVLARLFVFSSSSPQTVLNVKKYEDVSVGRSNTCN 71
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 233 DETGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVD 355
+E D + ++ SK +S +P+ G KRK+ R +VD
Sbjct: 85 EEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVD 125
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 502 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 368
+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 98 VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 384 ITRAKTERLASTIHPRTDLRFLSPSRRGL*HEWPFDIRRRTRLL 253
+ R ERLA T+ R + SR + H+W R R LL
Sbjct: 140 LQRQAKERLAQTLGIRDEEVSYEASRMPISHKWTNATRHRQALL 183
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 68 PGNGMPEVVRSGGRAQASYLLR 133
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 112 CSSTTSNNFWHPVAGYETFNFMTAVNPVEPRAEFLS 5
CS T NF V +E+ F+ PV+ +EF S
Sbjct: 831 CSEFTGVNFTCEVDWHESCKFLKVEFPVDIHSEFAS 866
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,908
Number of Sequences: 5004
Number of extensions: 55388
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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