Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30481
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 135 2e-32
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 135 3e-32
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 31 1.0
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 30 1.3
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 30 1.8
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 29 4.1
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 28 5.4
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 5.4
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 5.4
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 7.2
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 9.5
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493... 27 9.5
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 27 9.5
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 9.5
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 135 bits (327), Expect = 2e-32
Identities = 76/127 (59%), Positives = 88/127 (69%), Gaps = 2/127 (1%)
Frame = +2
Query: 230 PDETGRPDNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 403
P + G RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 62 PMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGEN 121
Query: 404 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPK 583
++PGLTD PR GPKRASKIRKLFNLSK+DDVR N + K N K KAPK
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVR-KYVNTYRRTFTTK-NGKKVSKAPK 179
Query: 584 IQRLVTP 604
IQRLVTP
Sbjct: 180 IQRLVTP 186
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +3
Query: 48 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 228 FPMKQGVLT 254
FPMKQGVLT
Sbjct: 61 FPMKQGVLT 69
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 135 bits (326), Expect = 3e-32
Identities = 75/127 (59%), Positives = 89/127 (70%), Gaps = 2/127 (1%)
Frame = +2
Query: 230 PDETGRPDNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 403
P + G + RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG
Sbjct: 62 PMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDN 121
Query: 404 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPK 583
++PGLTD PR GPKRASKIRKLFNL+K+DDVR N + K N K KAPK
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVR-KYVNTYRRTFTTK-NGKKVSKAPK 179
Query: 584 IQRLVTP 604
IQRLVTP
Sbjct: 180 IQRLVTP 186
Score = 101 bits (241), Expect = 6e-22
Identities = 43/70 (61%), Positives = 54/70 (77%)
Frame = +3
Query: 48 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 228 FPMKQGVLTT 257
FPMKQGVLT+
Sbjct: 61 FPMKQGVLTS 70
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 419 TDGNVPRR-LGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRL 595
TDG R +++S++ + L K+D VR+ + KENAK H+ P+ +R
Sbjct: 240 TDGKRNSRGFDDEKSSQVDRP-TLKKQDAVRLQDPRHFDRKDGRKENAKLHHEEPRSKRR 298
Query: 596 VTPGSSAAVERH 631
+ ERH
Sbjct: 299 RSTSRDHYQERH 310
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 30.3 bits (65), Expect = 1.3
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Frame = +2
Query: 239 TGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALV-IVRKGAQEIPG 415
T P S V + G + RRD RK++SV L+V + RKG
Sbjct: 204 TWNPSGSGVAASAAPGSAAQTGRRDRRRKKRSVHSGDEGHVLAVEGVPRATRKGRPASDK 263
Query: 416 LTDGNVPRRLGPKRASKIRKLFNLSKED--DVRVMSSNACSQPRKEKENAKPRHKAPK 583
+ P R P ASK + N S D D R + N + RK +E+ + + K
Sbjct: 264 KKEAGTPSRERP--ASKWCSVHNTSLHDLADCRAV-KNLAERTRKWEEDRRQERREGK 318
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 422 DGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRL 595
D NV ++ S+ +K K RV +P+KE+E + + APK ++L
Sbjct: 145 DDNVEHKVAVPTTSEEKKRRRRRKRGRGRVGGHGVAKRPKKEEEEEETKLSAPKAEQL 202
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 386 VRKGAQEIPGL------TDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKE 547
V+K + PG+ T GN G A+++++ + V+++S+ A P+K+
Sbjct: 50 VKKAIKRAPGVETVVTDTAGNKVVVTGAADAAELKERIEARTKKAVQIVSAGAGPPPKKD 109
Query: 548 KENAKPRHK 574
KE K + K
Sbjct: 110 KEEKKDKDK 118
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 28.3 bits (60), Expect = 5.4
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 320 RKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK-RASKIRKLFNLSKE 496
R RK++ + N S L + + ++P NV LG K + R + S+
Sbjct: 819 RNRKAITCQEIKENESALDKEEIANASADVPS---DNV-EELGLKYEKQEHRAEKSRSRS 874
Query: 497 DDVRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAAVERHR 634
+ S + S ++ ++ R KI R TPGS +++E HR
Sbjct: 875 SHRQTQSGSLDSDSTSDQHRSRERRSRHKI-RSGTPGSDSSIEHHR 919
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 5.4
Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Frame = +2
Query: 239 TGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVL-ALVIVRKGAQEIPG 415
T P S V + G + RRD RK++SV L+V A RKG
Sbjct: 31 TWNPSGSGVAASAAPGSAAQTGRRDRRRKKRSVHSGDEGHVLAVEGAPRATRKGRPASDK 90
Query: 416 LTDGNVPRRLGPKRASKIRKLFNLSKED--DVRVMSSNACSQPRKEKENAKPRHKAPK 583
+ P R P A K + N S D D R + N + RK +E+ + + K
Sbjct: 91 KKEAGTPARERP--AGKWCSVHNTSLHDLADCRAV-KNLAERTRKWEEDRRKERREGK 145
>04_04_0717 - 27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 28.3 bits (60), Expect = 5.4
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +2
Query: 377 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKE--------DDVRVMSSNACS 532
LV V + AQ++ DG + +G R L L KE DD+ VMS A S
Sbjct: 799 LVDVHRDAQKLMQSLDG-IQANVGSSRLEVADLLIELEKERFSKKRIEDDLEVMSRKASS 857
Query: 533 QPRKEKENA---KPRHKAPKIQRLVTPG 607
K +E+A K RH+ + + ++ G
Sbjct: 858 LRAKARESAVLEKLRHEVKEYRGILKCG 885
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 276 IRRRTRLLSGRPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRR 145
+ +RTR L V I+ RCR R+ H L D+ L+R+
Sbjct: 83 VHQRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRK 126
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 111 HKL-RIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTTAVFVF*CQRA 287
HKL + Y +M +EVE D +W+ Y ++ G K PM++ + T V Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 288 THVT 299
T V+
Sbjct: 247 TLVS 250
>12_01_0603 +
4937472-4938351,4938597-4938689,4938820-4939589,
4939706-4939809,4940026-4940548,4940697-4941074
Length = 915
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +2
Query: 422 DGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQ 589
DG + +GP + K L ++ + SS CS E+++ H AP +Q
Sbjct: 301 DGPCRKFIGPYTKKEHTKYLELQQDGESD--SSGECSDDSDSSESSEHAHSAPSVQ 354
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 203 RWRQRQARIPDE-TGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 343
R+R + ++ DE + RP ++ +S PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKL------SNSSSIPRREGLRPRRSIRG 170
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 84 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 173
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,027,979
Number of Sequences: 37544
Number of extensions: 422969
Number of successful extensions: 1326
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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