Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30481
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 179 2e-45
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 32 0.34
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_17770| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 29 2.4
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 29 3.2
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 4.2
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 29 4.2
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 28 5.6
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 28 5.6
SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15) 27 9.7
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 27 9.7
SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011) 27 9.7
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 179 bits (435), Expect = 2e-45
Identities = 88/125 (70%), Positives = 98/125 (78%)
Frame = +2
Query: 230 PDETGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
P + G N RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+I
Sbjct: 29 PMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDI 88
Query: 410 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQ 589
PGLTD +PRRLGPKR KIRK+FNLSKEDDVR +P EKE K + KAPKIQ
Sbjct: 89 PGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR---QYVIRRPLPEKEGKKAKSKAPKIQ 145
Query: 590 RLVTP 604
RLVTP
Sbjct: 146 RLVTP 150
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +3
Query: 150 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 254
EV + LGDEWKGYV R+ GGNDKQGFPMKQG++T
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMT 36
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 248 DALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 126
D L H +SL V+ SD + ++LP I + Y H L ++
Sbjct: 266 DPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306
>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1603
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 434 PRRLGP-KRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHK 574
P+RL KR K +K N+ K+D + + SS+ PR++ N P K
Sbjct: 98 PKRLNSFKRKDKAKKTDNVGKQD-ISIDSSDPVKPPRRKLPNPPPVEK 144
>SB_17770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +2
Query: 188 LCTSC-----RWRQRQARIPDETGRPDNSRVRLLMSKGHSCYRPR-RDGERK 325
LC SC WR+R ++T R NSR +L G +RPR R+GER+
Sbjct: 35 LCMSCYRYARAWRRRHRTQDEDTTRGWNSRPKL----GGMMWRPRDRNGERR 82
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +2
Query: 359 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQP 538
NLS++ + + E+ T GN P+ PK AS +R N + + +++ +
Sbjct: 301 NLSLVEMKTLDVLDTEMRMKTTGNPPKLSAPKSASSLRVAANFRRVSEAVIVTQSLVKNA 360
Query: 539 RKEK 550
R+E+
Sbjct: 361 RREQ 364
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 335 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 475
VR C +D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +3
Query: 156 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 239
E D+ G EW+G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 461 SKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAAVERH 631
+K +F+ S E R ++NA + R +KE H+ R ++ VERH
Sbjct: 459 NKTASVFSGSLERQFRAENANAREEIRLQKEKVSLEHQKRDRIRKISASEKLVVERH 515
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 443 LGPKR--ASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQR 592
L PKR ASK + NL + DVR + + PR EK+ H P I+R
Sbjct: 1366 LKPKRRHASKANPVKNLRERTDVRTETEVTKTSPRVEKKAVTSEH--PVIRR 1415
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 452 KRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAAVE 625
K ++ K + + +++ A + PRK K A K P TP +S AV+
Sbjct: 158 KVKKEVNKALAMESAGFMNALATAAVAAPRKRKRPATTAQKTPTATTPTTPTASTAVK 215
>SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 236 ETGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLAL 379
ETG N L S+ + C P GER+ K V G + S + L
Sbjct: 326 ETGEKPNILALALSSRKNLCIHPEVAGEREGKKVDGKCLSMTASFVRL 373
>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
Length = 857
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 291 EWPFDIRRRTRLLSGRPVSSGILACRCRQRHE 196
+W D+ + +L SG P+ + +LA +C Q E
Sbjct: 734 KWKNDLDNKLQLPSGEPIPAVLLANKCDQAKE 765
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 215 RQARIPDETGRPDNSRVRLLMSKGHSC---YRPRRDGERKRKSV 337
RQ P RP N + R L K + Y P+RD R+RK V
Sbjct: 156 RQRPSPHRRSRPRNRKDRQLDKKTKTLPNSYAPKRDKPRERKKV 199
>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
Length = 299
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 482 NLSKEDDVRVMSSNACSQPRKEKENAKPRHKA 577
N+SK DD++V A + +K++EN K R A
Sbjct: 50 NISK-DDLKVKIERAAERKKKQEENIKARQAA 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,468,765
Number of Sequences: 59808
Number of extensions: 477277
Number of successful extensions: 1496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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