Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30481
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   145   3e-35
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    34   0.099
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   3.7  
AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical p...    28   4.9  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    28   6.5  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   6.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   6.5  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   6.5  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    28   6.5  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  145 bits (351), Expect = 3e-35
 Identities = 77/129 (59%), Positives = 91/129 (70%)
 Frame = +2

Query: 230 PDETGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI 409
           P + G   N RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI
Sbjct: 62  PMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEI 121

Query: 410 PGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQ 589
            GLTD  +PR+LGPKRASKIRKLFNL+K DDV    +       K   +   +  APKIQ
Sbjct: 122 EGLTDSVLPRKLGPKRASKIRKLFNLTKHDDV----TKYVITHDKTFPDGVTKTIAPKIQ 177

Query: 590 RLVTPGSSA 616
           RL+TP   A
Sbjct: 178 RLITPARIA 186



 Score =  115 bits (276), Expect = 3e-26
 Identities = 50/69 (72%), Positives = 58/69 (84%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 228 FPMKQGVLT 254
           FPMKQG+LT
Sbjct: 61  FPMKQGILT 69


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 33.9 bits (74), Expect = 0.099
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 401 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHK 574
           Q  P + D N   R  PK   K  K+ +LS  ++    +   C +P KEKE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKEKEEKKQRTK 166


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 66  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 224
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF016440-6|AAN84798.1|  525|Caenorhabditis elegans Hypothetical
           protein F29G9.2b protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 464 KIRKLFNLSKEDDVR-VMSSNACSQPRKEKE 553
           +  K FN  KE  +R +M+++ CS+P +E+E
Sbjct: 271 EFNKCFNKHKESTLRRIMATSMCSEPSEEEE 301


>AF016440-5|AAB65904.2|  535|Caenorhabditis elegans Hypothetical
           protein F29G9.2a protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 464 KIRKLFNLSKEDDVR-VMSSNACSQPRKEKE 553
           +  K FN  KE  +R +M+++ CS+P +E+E
Sbjct: 281 EFNKCFNKHKESTLRRIMATSMCSEPSEEEE 311


>Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical
           protein F22D6.8 protein.
          Length = 100

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 456 VLPKSVSCSTLAKKMMYVLCRQTRAPSQGRKKK 554
           V+ KS  CS LA+K    +     AP +GRK K
Sbjct: 14  VIAKSNDCSMLAEKKKLPISDSKDAPKRGRKAK 46


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 GLCTSCRWRQRQARIPDETGRPDNS 259
           G  T  RW Q Q +IP  T  P+NS
Sbjct: 739 GPATQVRWLQDQQKIPVRTNYPNNS 763


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 347  IVDANLSVLALVIVRKGAQEIPGL-TDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSN 523
            +VD NLSVL   I   G + + G     +   ++G     K++ + +      +R ++ +
Sbjct: 2192 LVDKNLSVLKTEIRESGDEVVQGFWNTASDKEKVGAIICEKLKSIHHTLHTHAIRTVTES 2251

Query: 524  ACSQPRKEKENAKPRH 571
              +  +KE++     H
Sbjct: 2252 LSTDIQKEQQKLSTHH 2267


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 347  IVDANLSVLALVIVRKGAQEIPGL-TDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSN 523
            +VD NLSVL   I   G + + G     +   ++G     K++ + +      +R ++ +
Sbjct: 2192 LVDKNLSVLKTEIRESGDEVVQGFWNTASDKEKVGAIICEKLKSIHHTLHTHAIRTVTES 2251

Query: 524  ACSQPRKEKENAKPRH 571
              +  +KE++     H
Sbjct: 2252 LSTDIQKEQQKLSTHH 2267


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 81  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 224
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 185 GLCTSCRWRQRQARIPDETGRPDNS 259
           G  T  RW Q Q +IP  T  P+NS
Sbjct: 739 GPATQVRWLQDQQKIPVRTNYPNNS 763


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +3

Query: 258 AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 422
           A+  F C+   HVT  +      +E  +V++ + V+   I  S+  ++ + +   F    
Sbjct: 58  AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114

Query: 423 MEMYPAV*VPNVLPKSVSCSTLAKKMMYVL 512
              Y +V  P +L K  SC  + K  +Y+L
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYIL 143


>Z49967-9|CAA90256.1|  328|Caenorhabditis elegans Hypothetical
           protein F54C9.11 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +2

Query: 296 YRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEI---PGLTDGNVPRRLGPKRASK 466
           Y+     E +R+     + ++ L V  L    +  +E+   PG+   +  +   P+  S 
Sbjct: 95  YKMVNTAEARREKAGKLLTESRLEVEVLQAEVRALKELISAPGMGQNHFKQTTSPEHKST 154

Query: 467 IRKLFNLSKEDDVRVMSSNACSQPRKEKENAKP 565
           + KLFN S     +    +A +   K+K ++ P
Sbjct: 155 LSKLFNGSSSSSKK--QKDAANVSDKKKASSLP 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,419,721
Number of Sequences: 27780
Number of extensions: 333704
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)