Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30481
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   132   1e-31
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             132   2e-31
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.5  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    29   2.6  
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)...    29   3.4  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    29   3.4  
At2g29510.1 68415.m03584 expressed protein                             29   3.4  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    29   3.4  
At5g49340.1 68418.m06105 expressed protein similar to unknown pr...    28   4.5  
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28...    28   4.5  
At4g31240.2 68417.m04435 expressed protein                             28   6.0  
At4g31240.1 68417.m04434 expressed protein                             28   6.0  
At3g05760.1 68416.m00647 expressed protein                             28   6.0  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  132 bits (320), Expect = 1e-31
 Identities = 73/127 (57%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
 Frame = +2

Query: 230 PDETGRPDNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 403
           P + G     RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  
Sbjct: 62  PMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGEN 121

Query: 404 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPK 583
           ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR   +    + +   +  K   KAPK
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNT--YRRKFTNKKGKEVSKAPK 179

Query: 584 IQRLVTP 604
           IQRLVTP
Sbjct: 180 IQRLVTP 186



 Score =  101 bits (241), Expect = 5e-22
 Identities = 44/69 (63%), Positives = 53/69 (76%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 228 FPMKQGVLT 254
           FPMKQGVLT
Sbjct: 61  FPMKQGVLT 69


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  132 bits (319), Expect = 2e-31
 Identities = 75/127 (59%), Positives = 86/127 (67%), Gaps = 2/127 (1%)
 Frame = +2

Query: 230 PDETGRPDNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQ 403
           P + G     RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  
Sbjct: 62  PMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVS 121

Query: 404 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKENAKPRHKAPK 583
           ++PGLTD   PR  GPKRASKIRKLFNL KEDDVR    N   +    K+  K   KAPK
Sbjct: 122 DLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVR-KYVNTYRRTFTNKKGKKV-SKAPK 179

Query: 584 IQRLVTP 604
           IQRLVTP
Sbjct: 180 IQRLVTP 186



 Score =   99 bits (238), Expect = 1e-21
 Identities = 43/69 (62%), Positives = 53/69 (76%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 227
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 228 FPMKQGVLT 254
           FPMKQGVLT
Sbjct: 61  FPMKQGVLT 69


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 33  GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 179
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 404 EIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPR 541
           E+PGL D  V   L PK+ ++++KL    ++  V  + S     P+
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPK 665


>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 352

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 398 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKEN 556
           A  +P  TD ++          K++K+    +ED+  V SSN  SQ   +  N
Sbjct: 93  ASYLPERTDNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTN 145


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 398 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRVMSSNACSQPRKEKEN 556
           A  +P  TD ++          K++K+    +ED+  V SSN  SQ   +  N
Sbjct: 92  ASYLPERTDNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTN 144


>At2g29510.1 68415.m03584 expressed protein
          Length = 839

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 452 KRASKIRKLFNLSKEDD---VRVMSSNACSQPRKEKENAKPRHKAPKIQRLVTPGSSAAV 622
           K   K R LF+ SK D     R++S N     +K+ E  + R + P++  L      AAV
Sbjct: 226 KIVPKTRTLFSPSKPDSPSCTRIISKNLAEDFKKKGEKLEERIRNPRVHDLFGKEKPAAV 285


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 69  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPM 236
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + + G   +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At5g49340.1 68418.m06105 expressed protein similar to unknown
           protein (emb|CAB82953.1)
          Length = 457

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 236 ETGRPDNSRVRLLMSKGHSCYRPRRDGERKRKSVRG 343
           + GRPD+  +R      H C  PR DG++  K +RG
Sbjct: 132 KNGRPDSGFLRHRWQP-HGCSIPRFDGKKMLKMLRG 166


>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
           nearly identical to SC35-like splicing factor SCL28, 28
           kD [Arabidopsis thaliana] GI:9843655; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 236

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +2

Query: 440 RLGPKRASKIRKLFNLSKEDDV-----RVMSSNACSQPRKEKENAKPRHKAPKIQRLVTP 604
           R  P+R S+  K+    +EDD+     R  S +    PR E+E      ++P+ +R++TP
Sbjct: 165 RSPPRRESRHSKV----REDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTP 220

Query: 605 GSSAAVERHR 634
             S  + R R
Sbjct: 221 IRSRCLSRSR 230


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 260 GCCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 141
           G  +  L H     VVA + +K +    +   I LYFGAH
Sbjct: 174 GQLEKLLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 260 GCCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAH 141
           G  +  L H     VVA + +K +    +   I LYFGAH
Sbjct: 174 GQLEKLLTHESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At3g05760.1 68416.m00647 expressed protein
          Length = 202

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 491 KEDDVRVMSSNACSQPRKEKENAKPRHKAPKIQR 592
           K+ DV      A  + +KE + +K R K P +QR
Sbjct: 16  KKFDVEEFKERAREREKKESDRSKSRSKGPPVQR 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,727,735
Number of Sequences: 28952
Number of extensions: 313488
Number of successful extensions: 944
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)