Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   2.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   5.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    20   7.6  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    20   7.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.6  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   7.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 183  NRNKMADQNSIPTNADST 236
            N +  A+ N+IPTNA +T
Sbjct: 1015 NSSVNANTNNIPTNAGTT 1032


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 312 IVTASVTEVLLAMIINNLMY 371
           +VTA   + L A+ INN+++
Sbjct: 171 LVTAHRVQTLAAIRINNILF 190


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 78  CSIHSLIFHQDSLRARS 128
           CSI S   ++D+L ARS
Sbjct: 1   CSIDSKYSNEDTLGARS 17


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 265 ATKINGTGVRV 233
           ATK++GT VRV
Sbjct: 73  ATKVHGTTVRV 83


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 265 ATKINGTGVRV 233
           ATK++GT VRV
Sbjct: 387 ATKVHGTTVRV 397


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 265 ATKINGTGVRV 233
           ATK++GT VRV
Sbjct: 620 ATKVHGTTVRV 630


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 265 ATKINGTGVRV 233
           ATK++GT VRV
Sbjct: 620 ATKVHGTTVRV 630


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 189 FCCTYYVNKKCL 154
           F C YY  K C+
Sbjct: 231 FSCQYYQGKNCV 242


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 189 FCCTYYVNKKCL 154
           F C YY  K C+
Sbjct: 251 FSCQYYQGKNCV 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,264
Number of Sequences: 336
Number of extensions: 1998
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8330471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)