Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30479
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 29 0.26
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.45
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 1.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 2.4
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 3.2
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 4.2
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 5.5
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 24 7.3
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 24 9.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 9.7
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 24 9.7
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 29.1 bits (62), Expect = 0.26
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 346 ANKTSVTEAVTIKRL---AFMATSKLYTLCATKINGTGVRV 233
+ K S++ V IK L A + T KL LC T+IN V++
Sbjct: 1961 SRKLSMSSKVDIKALSQSAILITEKLINLCNTRINSKSVKM 2001
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 28.3 bits (60), Expect = 0.45
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 38 KLPVMTNYLNEHNLFNTFLDIPPGLVE 118
K+ ++L EHN+FNTFL G+V+
Sbjct: 577 KITDCLSFLLEHNIFNTFLVYNEGIVK 603
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 198 ADQNSIPTNADSTRTPVPFIFVAQSV*SLDVAMNAKRL 311
AD + P + D+ + P+P V SV + D+ AKR+
Sbjct: 641 ADALTKPPSLDAVKEPIPVPSVETSVVAQDLTHKAKRI 678
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 216 VSNFDPPFCFCCTYYVNKK 160
VSN PPF C TY ++K+
Sbjct: 3032 VSNIGPPFPNCSTYILSKE 3050
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +3
Query: 75 ICSIHSLIFHQDSLRARSEICKGCSKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVP 251
+ S+H + Q + ARS G + F H + +K + +S P + +T+TP P
Sbjct: 631 LASLHDMRKSQSPICARSATSAGLPR---FEYHT--SLSKSLEHSSTPASLQATKTPSP 684
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 4.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 174 YVNKKCLF*SSL-YKFQI*LSTSPGGISRNVLNRL 73
+V K LF + + Y L SPGG+ VLNR+
Sbjct: 211 FVGKVSLFTTLIVYSLYDSLHPSPGGLKHQVLNRI 245
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 50 MTNYLNEHNLFNTFLD 97
+T +NEHN N FLD
Sbjct: 81 LTGVINEHNFRNQFLD 96
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.2 bits (50), Expect = 7.3
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Frame = +3
Query: 141 GCSKIDTFYLHNMCNRNKMADQNSI-------PTNADSTRTPV 248
GC DTFY N K +SI P NA RTP+
Sbjct: 256 GCQLCDTFYHKNCKEHAKKCSHDSIGKKGMRVPKNAVVIRTPL 298
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 81 SIHSLIFHQDSLRARSEICKGCSKIDTFYLHNMCNRNKMADQNSIP 218
+ H+ FH SL + + + YL+N N K+ + IP
Sbjct: 286 AFHTDTFHDSSLLLIYDFYPCTTTLGELYLNNSKNSVKLEENRKIP 331
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 9.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 157 SILEQPLQISDLALNESWWNIKECIEQIVFVQII 56
++LE L D L +SW ++ CI Q+ VQ+I
Sbjct: 1048 TLLEISLAHGD-KLRDSWKDVLLCISQLERVQLI 1080
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 157 TLFIYIICATETKWRIKIRYLPTLIQRGHLCHL 255
T ++Y++C +E + + ++L + RG C L
Sbjct: 201 TWYLYVLCTSEGEVLLPQKWLASKTARGTSCAL 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,391
Number of Sequences: 5004
Number of extensions: 29942
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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