Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1024 + 22371260-22371481,22371514-22372188,22372291-223732...    27   5.4  
10_03_0002 - 6858257-6861205                                           27   7.1  
05_04_0179 + 18784011-18784240,18785035-18785119,18785905-187861...    27   7.1  
11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549     26   9.4  
10_01_0127 - 1519803-1520036,1520802-1521095,1521840-1522614,152...    26   9.4  
07_03_1436 - 26543846-26546806                                         26   9.4  
06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847     26   9.4  

>10_08_1024 +
           22371260-22371481,22371514-22372188,22372291-22373236,
           22389377-22389552
          Length = 672

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 NMCNRNKMADQNSIPTNADSTRTP 245
           N+ N+ K     S+P N+ STRTP
Sbjct: 136 NILNQTKTMIATSVPANSASTRTP 159


>10_03_0002 - 6858257-6861205
          Length = 982

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 165 YLHNMCNRNKMADQNSIPTNADSTRTP 245
           ++ N+ N+ K     S+P N++S RTP
Sbjct: 306 HVDNILNQTKTMIAASVPVNSESVRTP 332


>05_04_0179 +
           18784011-18784240,18785035-18785119,18785905-18786102,
           18786347-18786527,18787026-18787315,18787583-18787771,
           18788316-18788792
          Length = 549

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
 Frame = +3

Query: 84  IHSLIFHQDSLRARSEICKGCSKIDT--FYLHNMCNRN---KMADQNSIP--TNADSTRT 242
           IH++ F     R R E+ +GC  + T  F LH         KMA+Q      T+ DST T
Sbjct: 384 IHTIFFDPVIKRVRQEVLQGCKLVFTRVFPLHQRQQDQMIWKMAEQLGAVCCTDVDSTVT 443

Query: 243 PV 248
            V
Sbjct: 444 HV 445


>11_04_0341 - 16565757-16566418,16566668-16567799,16567965-16568549
          Length = 792

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 NMCNRNKMADQNSIPTNADSTRTP 245
           N+ N+ K     S+P N+ STRTP
Sbjct: 257 NILNQTKTMIAASVPVNSASTRTP 280


>10_01_0127 -
           1519803-1520036,1520802-1521095,1521840-1522614,
           1524574-1525412
          Length = 713

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 176 YVQQKQNGGSKFDTYQR*FN 235
           +VQQ QNGGS F+  +  FN
Sbjct: 462 FVQQTQNGGSLFEQGENYFN 481


>07_03_1436 - 26543846-26546806
          Length = 986

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 NMCNRNKMADQNSIPTNADSTRTP 245
           N+ N+ K     S+P N+ STRTP
Sbjct: 312 NILNQTKTMIAASVPANSASTRTP 335


>06_03_0390 - 20280355-20281178,20281392-20281565,20281613-20281847
          Length = 410

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 174 NMCNRNKMADQNSIPTNADSTRTP 245
           N+ N+ K     S+P N+ STRTP
Sbjct: 112 NILNQTKTMIAASVPANSASTRTP 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,720
Number of Sequences: 37544
Number of extensions: 174273
Number of successful extensions: 341
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)