Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)                    27   5.4  
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)                 27   7.2  
SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        26   9.5  
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +3

Query: 216 PTNADSTRTPVPFIFVAQSV*SLDVAMNAKRLIVTASVTEVLLAMIINNLMYIIKIFI 389
           P +    R P P    A  V SLD  +  + L+  A +T + +A+ I    YII  F+
Sbjct: 327 PRSTQHARLPSPTTRHALRVTSLDTPLGCRPLVWWAQLTLLAIAITIQVRTYIIWTFL 384


>SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)
          Length = 375

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  LLTDSTTKLPVMTNYLNEHNLFNTFLD 97
           LLT     L ++T Y++ H L  T++D
Sbjct: 171 LLTTYMDNLTLLTTYMDNHTLLTTYMD 197



 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  LLTDSTTKLPVMTNYLNEHNLFNTFLD 97
           LLT     L ++T Y++ H L  T++D
Sbjct: 251 LLTTYIDSLTLLTTYMDNHTLLTTYMD 277



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  LLTDSTTKLPVMTNYLNEHNLFNTFLD 97
           LLT     L ++T Y++ H L  T++D
Sbjct: 121 LLTIYMDNLTLLTTYMDNHTLLTTYMD 147


>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 247 CHLFLLHRVYKVW 285
           CH+F LH++Y +W
Sbjct: 447 CHVFPLHKIYHLW 459


>SB_2866| Best HMM Match : RasGEF (HMM E-Value=1.3e-26)
          Length = 566

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
 Frame = +3

Query: 81  SIHSLIFHQDSLRARSEICKGCSKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVP-FI 257
           S HSL  HQ   R   ++ + C   D         +  +A Q   P N +  +T VP + 
Sbjct: 226 SNHSLS-HQLCFRFSQDVMR-CILNDNLQDEYEALKKAIASQKREPANDEKIKTHVPTYE 283

Query: 258 FVAQSV*---------SLDVAMNAKRLIVTASVTEVLLAMIINNLMYIIKIFI 389
           F+ QS           +LD+ ++    +    +TE+ LA  ++  ++++K FI
Sbjct: 284 FIYQSFDREKFGQISANLDICLSRFNEVHYWVITEICLATQLSKRVFLLKKFI 336


>SB_49585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 161 SVYFRAAFTNFRSSSQRVLVEYQGM 87
           S YF A FTN    SQ+ ++E QG+
Sbjct: 60  SDYFYAMFTNDMLESQKGVIELQGL 84


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 135 CKGCSKIDTFYLHNMCNRNKMADQNSIP 218
           C  C     F  +N CN N  ADQ S+P
Sbjct: 381 CTSCKPPKVFQ-NNACNNNCTADQVSVP 407


>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 321 ASVTEVLLAMIINNLMYIIKI 383
           ASVT VL    IN L+Y++KI
Sbjct: 272 ASVTAVLFNSFINPLLYLLKI 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,718
Number of Sequences: 59808
Number of extensions: 218763
Number of successful extensions: 519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)