Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein.     30   3.1  
EF015905-1|ABM64216.1| 1255|Homo sapiens period 2 protein.             29   7.2  
AC012485-1|AAX88976.1| 1255|Homo sapiens unknown protein.              29   7.2  
AB002345-1|BAA20804.2| 1281|Homo sapiens KIAA0347 protein protein.     29   7.2  

>AB058743-1|BAB47469.2| 2443|Homo sapiens KIAA1840 protein protein.
          Length = 2443

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 299 VHGNIQTLYTLCNKNKWHRC 240
           +HG+  T+ TLC+ N W RC
Sbjct: 507 IHGSASTVDTLCHLNGWGRC 526


>EF015905-1|ABM64216.1| 1255|Homo sapiens period 2 protein.
          Length = 1255

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 102 HQDSLRARSEICKGCSKID--TFYLHNMCNRNKMADQNSIPTNADSTRTPVP 251
           H+DS R R+EICK  +K    + Y H      K      + TN  + +  VP
Sbjct: 506 HEDSRRRRAEICKNGNKTKNRSHYSHE-SGEQKKKSVTEMQTNPPAEKKAVP 556


>AC012485-1|AAX88976.1| 1255|Homo sapiens unknown protein.
          Length = 1255

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 102 HQDSLRARSEICKGCSKID--TFYLHNMCNRNKMADQNSIPTNADSTRTPVP 251
           H+DS R R+EICK  +K    + Y H      K      + TN  + +  VP
Sbjct: 506 HEDSRRRRAEICKNGNKTKNRSHYSHE-SGEQKKKSVTEMQTNPPAEKKAVP 556


>AB002345-1|BAA20804.2| 1281|Homo sapiens KIAA0347 protein protein.
          Length = 1281

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +3

Query: 102 HQDSLRARSEICKGCSKID--TFYLHNMCNRNKMADQNSIPTNADSTRTPVP 251
           H+DS R R+EICK  +K    + Y H      K      + TN  + +  VP
Sbjct: 532 HEDSRRRRAEICKNGNKTKNRSHYSHE-SGEQKKKSVTEMQTNPPAEKKAVP 582


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,046,325
Number of Sequences: 237096
Number of extensions: 1047039
Number of successful extensions: 1836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1836
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2756025120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)