Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.1  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   5.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   8.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -3

Query: 321 PSQLNVWRSWQHPNFIHSVQQ 259
           P+    WR W+ PN +  + +
Sbjct: 856 PAVYEDWRHWKFPNLVEVLDE 876


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 287 CCHERQTFNCDGFSNRSFVSDDN 355
           CC  R   +  G SNRS  S ++
Sbjct: 88  CCGMRWPGDATGLSNRSSTSSND 110


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = +2

Query: 242 TCAIYFCCTECIKFGCCHERQTFNCDGFSNRSFVSDDN 355
           T  I  C T     G  + +++ + +  +NR+ +  DN
Sbjct: 15  TITIVMCQTFTYSHGWTNGKRSTSLEELANRNAIQSDN 52


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 317 DGFSNRSFVSDDNQ 358
           DG+S R  VSD N+
Sbjct: 376 DGWSARGLVSDGNE 389


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -2

Query: 118 LNESWWNIK 92
           +N+ WWN+K
Sbjct: 363 MNKWWWNMK 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,437
Number of Sequences: 438
Number of extensions: 2039
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)