Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30479
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12180.1 68416.m01519 cornichon family protein contains Pfam ...    30   0.49 
At1g76970.1 68414.m08962 VHS domain-containing protein / GAT dom...    27   4.5  
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ...    27   6.0  
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea...    26   7.9  
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein...    26   7.9  

>At3g12180.1 68416.m01519 cornichon family protein contains Pfam
           profile: PF03311 cornichon protein
          Length = 146

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
 Frame = +1

Query: 133 FVKAALK*TLFIYIICAT----------ETKWRIKIRYLPTLIQRGHLCHLFLL--HRVY 276
           FV  AL  ++F  +IC T          ET  RI    +P  I +G LC LFLL  H V+
Sbjct: 13  FVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSLCLLFLLTWHWVF 72

Query: 277 KVWMLP*T 300
            +  +P T
Sbjct: 73  FLVAVPVT 80


>At1g76970.1 68414.m08962 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to
           HGF-regulated tyrosine kinase substrate [Mus musculus]
           GI:1089781; contains Pfam profiles PF00790: VHS domain,
           PF03127: GAT domain
          Length = 446

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 ICKGCSKIDTFYLHNMCNRNKMADQNSIPTNADSTRTPVP 251
           +C+G +  D    H +   + +A+  S+P+N  +TR P P
Sbjct: 238 LCQGLALNDNLQ-HVLQRHDDIANVGSVPSNGRNTRAPPP 276


>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 769

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 263 CTECIKFGCCHERQTFNC 316
           C+ C K G C  ++TFNC
Sbjct: 606 CSVCKKSGHCPTKETFNC 623


>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           damage-specific DNA binding protein 2 (GI:10798819)
           [Homo sapiens]
          Length = 557

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 180 CNRNKMADQNSIPTNADSTRTPVPFIFVAQ 269
           C    + D   +PT+  +T+ P+ F+F  Q
Sbjct: 115 CPHRVVTDHGILPTSHRNTKNPIDFVFKRQ 144


>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
           similar to SP|O15173 Membrane associated progesterone
           receptor component 2 (Steroid receptor protein DG6)
           {Homo sapiens}; contains Pfam profile PF00173:
           Heme/Steroid binding domain
          Length = 245

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 212 RILIRHFVSVAHIM*IKSVYFRAAFTNFRSSSQRVL 105
           R L+  FV V  I+ + S+YFR++F + +   Q+ L
Sbjct: 6   RFLLSPFVGVTFIVVLVSLYFRSSFKSPQHQYQKRL 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,111
Number of Sequences: 28952
Number of extensions: 151241
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)