Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30478
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0488 - 34281623-34283431                                         29   3.8  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    29   5.0  
06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648...    28   6.6  

>03_06_0488 - 34281623-34283431
          Length = 602

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 197 ANPKRNFLSPYS*RSGYRHCQRLCSQANSPPSLL 96
           ++P    LSP + R+  +HC RL + +++P SLL
Sbjct: 6   SSPSAPRLSPSAARAAEQHCLRLLAASSTPTSLL 39


>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
            21800918-21800957,21801471-21801766,21802696-21802774,
            21803013-21803100,21803189-21803273,21803364-21803625,
            21803720-21805027,21806187-21806393,21807288-21807519,
            21808267-21808353,21808427-21808735,21808879-21808957,
            21809788-21809867,21809952-21810029,21810744-21810831,
            21811102-21811241,21811342-21811415,21812043-21812125,
            21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 578  LENAVQNALRLXXXXXXXXXXXQDWMREAENPAQWRTIGEAYVYQ 444
            L++ ++ AL+             DW R   N A++ ++G+AY +Q
Sbjct: 1112 LQSDIKAALKTAFANMDGPLLVTDWCRGRSNAAEYASMGDAYSFQ 1156


>06_03_1343 -
           29463880-29464054,29464460-29464611,29464734-29464889,
           29465010-29465316,29465411-29465527,29465600-29465934
          Length = 413

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 88  VRNNKLGGLFAWEHRR*QWRYPERYEYGLRKFRLGLACLI 207
           V  N L G ++      QW      +YGL  + LG+ CLI
Sbjct: 201 VGENVLAGTWSSNSYTPQWLTSAMLQYGLETWNLGVICLI 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,899,463
Number of Sequences: 37544
Number of extensions: 297709
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)