Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30478
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 158 RSGYRHCQRLCSQANSPPSLL 96
           R G R C R CS AN+ PS++
Sbjct: 440 REGVRICSRACSSANADPSVV 460


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 43  VXYDDARSVIEKGKYVRNNKLGGLFAW 123
           V YDD  SV EK  Y++   L G   W
Sbjct: 325 VGYDDVTSVQEKVNYIKKKSLLGAMFW 351


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 363 IPPHTKQRNTILIMITITKRSLNKSCKYKKKRLDCERXKSQS 238
           +P    QRN+++   T+   SLN+  K  KK  + ER KS S
Sbjct: 48  MPRLASQRNSVMFSCTLPAFSLNR--KESKKAKELERKKSLS 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,117,711
Number of Sequences: 59808
Number of extensions: 362057
Number of successful extensions: 980
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)