Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30478
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.2  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 731 NHIFRLPYNNKYDQNQKIQFARCIY*INGLVVLAGQPITV 612
           N+ ++  YNNKY+ N    + + +Y  N ++ +   P+ V
Sbjct: 93  NNNYKYNYNNKYNYNNN-NYNKKLYYKNYIINIEQIPVPV 131


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 385 SNHNAKPHTASYETKKYNFNHDHN 314
           SN+N+  +  +Y     N+N+++N
Sbjct: 83  SNNNSLSNNYNYNNNYNNYNNNYN 106


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172  LRKFRLGLACLIWIRITDRN 231
            L+K +LGL   +W R + +N
Sbjct: 1894 LKKLKLGLRSSLWSRPSTQN 1913


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 172  LRKFRLGLACLIWIRITDRN 231
            L+K +LGL   +W R + +N
Sbjct: 1890 LKKLKLGLRSSLWSRPSTQN 1909


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 504 PVLPATLHPHHHSTEPKGVLH 566
           P +    H HHH T+    LH
Sbjct: 345 PTMGPPHHHHHHQTQSLQHLH 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,252
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)