Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30478
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    33   0.26 
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    30   1.4  
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    29   2.4  
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    29   3.2  
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ...    29   3.2  
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    29   4.2  
At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to...    29   4.2  
At1g61890.1 68414.m06982 MATE efflux family protein similar to r...    28   7.3  

>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 40  LVXYDDARSVIEKGKYVRNNKLGGLFAW 123
           L+ YDD +SV+ K KY +   L G F+W
Sbjct: 305 LIGYDDHQSVVAKVKYAKQKGLLGYFSW 332


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  VXYDDARSVIEKGKYVRNNKLGGLFAW 123
           + YDD +S++ K KY +   L G F+W
Sbjct: 320 IGYDDNQSIVMKVKYAKQRGLLGYFSW 346


>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  VXYDDARSVIEKGKYVRNNKLGGLFAW 123
           + YDD +S++ K +Y +   L G F+W
Sbjct: 322 IGYDDNQSIVTKVRYAKQRGLLGYFSW 348


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  VXYDDARSVIEKGKYVRNNKLGGLFAW 123
           + YDD +S++ K KY +   L G F+W
Sbjct: 321 IGYDDNQSIVYKVKYAKFTGLLGYFSW 347


>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 173

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 167 YS*RSGYRHCQRLCSQANSPPSLLFLTY 84
           +S R+ Y H +R  SQ  SPPS L L Y
Sbjct: 109 HSDRAAYHHLERFSSQLISPPSPLPLDY 136


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  VXYDDARSVIEKGKYVRNNKLGGLFAW 123
           + YDD +S++ K +Y +   L G F+W
Sbjct: 311 IGYDDNQSIVSKVRYAKLKGLLGYFSW 337


>At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to
           GI:2598575 MtN21 (GI:2598575) {Medicago truncatula}
          Length = 260

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 731 NHIFRLPYNNKYDQNQKIQFARCIY*INGLVVLA 630
           +H+  LP+NN  D N K     C+Y + G+V+L+
Sbjct: 78  SHLEALPHNNS-DHNTKNWLLGCLYLVIGIVLLS 110


>At1g61890.1 68414.m06982 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 501

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 468 CSPLSRIFGFSHPVLPATLHPHHHSTEPK----GVLHCVFQFAVS 590
           C P+S +F FS+P+L A   P   +T       G++  +F +AV+
Sbjct: 140 CLPMSFLFLFSNPILTALGEPEQVATLASVFVYGMIPVIFAYAVN 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,995,177
Number of Sequences: 28952
Number of extensions: 251322
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)