Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30477
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.28 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   1.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   6.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 304 NKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQ 402
           N  FRPRN+   +KN  ++      N+  GP++
Sbjct: 402 NVCFRPRNNSILIKNFNDSPESNRSNEIDGPEK 434


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +1

Query: 286 PRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPR---NNFNNGNQPPKKN 453
           PRPN+  ++  RP    N         +D  Q     P     R   NN NN N   +KN
Sbjct: 332 PRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKN 391

Query: 454 NFNGDKS 474
           N N +++
Sbjct: 392 NPNDNRN 398


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 146 LSTIKMQYNGFHN 184
           L TI M Y+GFHN
Sbjct: 485 LYTIHMGYHGFHN 497


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 528 NYNKNYGPKTYNNQNCYGNEQPE 596
           NY + +  + Y  +NC G +  E
Sbjct: 246 NYQEGFSCQYYQGKNCVGGKVDE 268


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,732
Number of Sequences: 336
Number of extensions: 4202
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)