Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30477
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 32 0.076
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.31
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 29 0.71
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 29 0.94
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 2.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 2.9
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.8
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 5.0
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 6.6
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.8
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 25 8.8
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 8.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.8
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 8.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 8.8
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 325 NDFNEVKNDYNTKNDG-NQNDFGGPKQFRPRNNFNNGNQPP--KKNNFNGDKSPGN 483
N ++ ++ +N N G N+N+ G P+ R N+NN P N + ++SP N
Sbjct: 315 NKYSHYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRSANQSPRN 370
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Frame = +1
Query: 283 GPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQN----DFGGPKQFRPRNNFNNGNQPPKK 450
G + + + N+ N +YN N GN N Q + N+ + K
Sbjct: 551 GMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNK 610
Query: 451 NNFNGDKSPGNMQYGNKNDLAVLNN 525
N+N + N YGN N+ NN
Sbjct: 611 QNYNNN---NNQNYGNNNNQNYNNN 632
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 546 GPKTYN-NQNCYGNEQPEFIPRQSYSPNSVQHSLNDRKLQSKKAKHPGDSLLKAN 707
GP YN N NC N I ++SY+ +S+ + L + + P S+L N
Sbjct: 589 GPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSRTIPKLSILPTN 643
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 28.7 bits (61), Expect = 0.94
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +1
Query: 406 RPRNNFNNGNQPPKK-----NNFNGDKSPGNMQYGN 498
R ++GNQPP++ N F+ P NMQ GN
Sbjct: 569 RNTQTLSSGNQPPQQSGPNPNEFSMSMDPANMQQGN 604
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.5 bits (58), Expect = 2.2
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Frame = +1
Query: 139 KSIVHHQNAVQRVSQSTSDFQASARPQ*TIR*NSIH*RSPDFGGPKNFGPRPNMMNKNFR 318
++ +H + + + + DF++S + + S H R+ K+FG + N++ +
Sbjct: 136 RNSIHRLSNIS-IGNNPIDFESSQQNNPSSLNTSSHHRTSSISNSKSFGTSLSYYNRSSK 194
Query: 319 PRNDFNEVKNDYNTKN--DGNQNDFGGPKQ---FRPRNNFNNGNQPPKKN------NFNG 465
P +D+N+ N + Q+ P Q F N+ + + PK++ NF+
Sbjct: 195 P-SDWNQQNNGGHLSGVISITQDVSSVPLQSSVFSSGNHAYHASMAPKRSGSWRHTNFHS 253
Query: 466 DKSPGNMQYGNKNDL 510
P GNK+ +
Sbjct: 254 TSHPRAASIGNKSGI 268
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +1
Query: 49 GSYVNDHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQASARP 216
GS++N+H L HK ++ P S +H + Q + S + + + +P
Sbjct: 151 GSFINNHIL------HKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKP 200
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = +1
Query: 286 PRPNMMNKNFRPRNDFNE--VKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPK 447
P P+ + N F++ + Y+ +D N +DFGG NF N K
Sbjct: 80 PSPSSFLSDHNNNNLFSDDTISRQYSNTDDINPSDFGGQCAILDSQNFTLSNASTK 135
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 112 STVKPFEANKSIVHHQNAVQRVSQSTSDFQASARPQ*TIR*NSI 243
S + PF +KS HH ++ +V +STS+ + S P T+ N +
Sbjct: 534 SPISPFSKSKSHNHHPSS--QVEKSTSNSKGSMLPLDTLYNNKL 575
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 532 ITRIMGLKHTTTRIAMGMSSLNLFLGNLTVQTLF 633
IT++ L +TTR A G + NLF G ++ T F
Sbjct: 474 ITKMTMLASSTTRPATGQTGDNLFRGFSSLSTRF 507
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 217 AVWLRPENRMLIVKPVVLHFDGG 149
+VWL N M P++LH GG
Sbjct: 105 SVWLAKVNGMTKSDPIILHLHGG 127
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +1
Query: 286 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQ 438
P+P + P N+ N +++ N N+ Q+ P F N+GNQ
Sbjct: 227 PKPQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSMFAG----NSGNQ 273
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 331 FNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKN 453
F E N Y+T NDGN ++ + + +N +P N
Sbjct: 818 FLENANPYSTNNDGNPSNNTSDVEVNETSMNDNSEEPISSN 858
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 340 VKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
VKND D N +F QF+ RN G+
Sbjct: 9 VKNDKENFEDPNATNFESVSQFKIRNVIGKGS 40
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +1
Query: 580 GMSSLNLFLGNLTVQTLFNIL*MIANYRAKKQNILVIAC 696
G++ + +LG + + ++ I N A + +I +I+C
Sbjct: 264 GIARIQFYLGKFDISLIMALISAIINKTASQNSIKIISC 302
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +1
Query: 307 KNFRPRNDF-NEVKNDYNTKNDGNQNDFGGP-KQFRPRNNFNNGNQPPKKNNFNGDKSPG 480
+ + RN + +E+ Y+ D +G K+F+P+N PKKNN +
Sbjct: 170 RKLKERNYWKSEISEIYDFLEDKRTASYGKTHKRFQPQNKNLGKEFLPKKNNTTNSR--- 226
Query: 481 NMQYGNKNDLAVLNNKII 534
N++ N + + +NK +
Sbjct: 227 NLRKTNISRIEYSSNKFL 244
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 349 DYNTKNDG-NQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNM 486
D +T N N F P Q P N+F+N N N+FN ++ ++
Sbjct: 165 DKSTSNSTVTSNQFNKPTQNSPFNSFSNNN-----NSFNNNQQANDI 206
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 8.8
Identities = 20/99 (20%), Positives = 41/99 (41%)
Frame = +1
Query: 328 DFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGNKND 507
D V D N G++ + K P+ + + P + NGD + +
Sbjct: 2 DVMNVPVDSERDNPGDKVETQSDKNHLPKASPSQSQSPVNTSLHNGDGKDNGVATEPVEN 61
Query: 508 LAVLNNKIITRIMGLKHTTTRIAMGMSSLNLFLGNLTVQ 624
+L+ + +TR K T ++ +SS++ G+++ Q
Sbjct: 62 KQILSERSVTRDDYEKGKTIVSSLALSSISGKDGSISSQ 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,778
Number of Sequences: 5004
Number of extensions: 68942
Number of successful extensions: 250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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