Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30477
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 33 0.32
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969... 31 1.3
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 30 2.3
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 29 3.0
03_02_0362 - 7809752-7810357,7811018-7811914 29 4.0
07_03_1053 - 23600983-23601550,23601947-23602105,23602192-236023... 29 5.2
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 5.2
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215 28 6.9
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 28 9.2
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282... 28 9.2
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = -2
Query: 725 NLVRSHIGFQQAITRMFCFFAL*FAIIQRMLNRVWTVRLPRNKFRLLIPIAILV--VVCF 552
++++ I F + +F FF L I+ ++ + LP F +P A L VVC+
Sbjct: 489 DIIKCKIVFWKKANLIFLFFLLRKLILPFYSFTLFCIILPMTMF---VPEAELPDWVVCY 545
Query: 551 RPIILVIILLFRTAKS--FLLPYCIFPGDLS 465
P ++ ++ + + KS F++PY +F +S
Sbjct: 546 IPALMSLLNILPSPKSFPFIIPYLLFENTMS 576
>01_05_0299 -
20595919-20595963,20596111-20596221,20596901-20596984,
20597350-20597450,20597584-20598301
Length = 352
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/91 (27%), Positives = 40/91 (43%)
Frame = +1
Query: 229 R*NSIH*RSPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFR 408
R NS++ + K++G + N N FN++ YN ++G N +GG
Sbjct: 91 RYNSVNLPVDNNNNNKSYGGAAKINNNNVNAFG-FNKM-GGYNNSSNGGGN-YGG-NGGD 146
Query: 409 PRNNFNNGNQPPKKNNFNGDKSPGNMQYGNK 501
++ FN P NN N + + G YG K
Sbjct: 147 VKSYFNKSVGRPASNNNNNNSNGGGGYYGKK 177
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Frame = +1
Query: 295 NMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKN-----NF 459
++ KN N DY+ N G N+ GG + + N +NG Q N ++
Sbjct: 48 DVKGKNNGQENGSGGRNYDYDYYNRGYSNNNGGYQNYNYNGNNSNGYQNYNYNGNGQGHY 107
Query: 460 NGDKSP---GNMQYGNKND 507
NG P GN QY N +
Sbjct: 108 NGGYQPIHQGNGQYQNNGN 126
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = -2
Query: 716 RSHIGFQQAITRMFCFFAL*FAIIQRMLNRVWTVRLPRNKFRLLIPIAILV--VVCFRPI 543
+S I + + FF L I+ ++ V LP F +P A L V+C+ P+
Sbjct: 510 KSKISTWKKANLVMLFFLLRKLILPFYSFTLFCVILPLTMF---VPEAELPIWVICYVPV 566
Query: 542 ILVIILLFRTAKS--FLLPYCIFPGDLS 465
I+ ++ + KS F++PY +F +S
Sbjct: 567 IMSVLNILPAPKSFPFVIPYLLFENTMS 594
>03_02_0362 - 7809752-7810357,7811018-7811914
Length = 500
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 319 PRNDFNEVKNDYNTKNDGNQND 384
P+NDF +V DY T DG Q D
Sbjct: 269 PKNDFLDVLLDYRTTEDGRQFD 290
>07_03_1053 -
23600983-23601550,23601947-23602105,23602192-23602357,
23602959-23603502,23604506-23604679,23605740-23605985
Length = 618
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 167 YNGFHNQHPIFRPQPDRNEQFGKIPYIKGLLILEDLKTLD 286
Y G HN HP +PQP+R G +P I+G + + T D
Sbjct: 285 YKGRHN-HP--KPQPNRRLSAGAVPPIQGEERYDGVATTD 321
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 367 DGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGN 483
+G+ ND GP ++ + + G PP+K+NF GN
Sbjct: 427 EGSPND--GPTEYSETTSMDYGELPPEKSNFASTMLIGN 463
>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
Length = 1073
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 451 NNFNGDKSPGNMQYGNKNDLAVLNNKIITRIMGLKHTTTRIAMGMSSLNLFLGNL 615
NN NG PG N L + NNK++ I + T ++M + + N G++
Sbjct: 193 NNLNGTIPPGIGSLPNLKYLLLANNKLVGSIPRSLGSRTSLSMVVLAYNSLTGSI 247
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Frame = +1
Query: 301 MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPG 480
MN F +D + + +N+ +D P Q P N F N NN+ D
Sbjct: 319 MNALFPAASDMSSLSMPFNSSPSEATSDAAVPIQDDPNNYFATNNDIGGNNNYMPDIPSS 378
Query: 481 NMQYGNKNDLAVLNNKI-----ITRIMGLKHTTTRIAMGMSS 591
+ + + A+ KI + R+ L+H R+ G +S
Sbjct: 379 AQEDEDFVNGALAAGKIGRTASLQRVASLEHLQKRMCGGPAS 420
>02_03_0218 +
16526082-16526375,16526606-16526725,16528078-16528238,
16528601-16528634,16529296-16529398,16529784-16529963,
16530726-16530742
Length = 302
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = +1
Query: 271 PKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFG--GPKQFRPRNNFNNGNQPP 444
P N + FR R+D N + K N +DFG + FR +F N + P
Sbjct: 241 PMNMENNFGQHDSRFRNRHDSNYAPRNMENKFGSNDSDFGTQSGRSFRHDPSFRNQHGSP 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,917,931
Number of Sequences: 37544
Number of extensions: 407652
Number of successful extensions: 975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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