Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30477
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79201-1|CAA55792.1| 391|Homo sapiens SYT protein. 30 7.8
CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein. 30 7.8
CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein. 30 7.8
BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and pol... 30 7.8
BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma transl... 30 7.8
BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma transl... 30 7.8
BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma transl... 30 7.8
BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma transl... 30 7.8
BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and pol... 30 7.8
AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein. 30 7.8
AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein. 30 7.8
AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein. 30 7.8
AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2... 30 7.8
AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2... 30 7.8
AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1... 30 7.8
AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1... 30 7.8
AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein. 30 7.8
>X79201-1|CAA55792.1| 391|Homo sapiens SYT protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>CR542103-1|CAG46900.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>CR542088-1|CAG46885.1| 391|Homo sapiens SS18 protein.
Length = 391
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>BC146778-1|AAI46779.1| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 30.3 bits (65), Expect = 7.8
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 346 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 498
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1130 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1180
>BC096224-1|AAH96224.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>BC096223-1|AAH96223.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>BC096222-1|AAH96222.1| 418|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 418
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>BC096221-1|AAH96221.1| 387|Homo sapiens synovial sarcoma
translocation, chromosome 18 protein.
Length = 387
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>BC065384-1|AAH65384.2| 1555|Homo sapiens PCF11, cleavage and
polyadenylation factor subunit, homolog (S. cerevisiae)
protein.
Length = 1555
Score = 30.3 bits (65), Expect = 7.8
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 346 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 498
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1130 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1180
>AF343880-1|AAK21314.1| 422|Homo sapiens SYT variant 1 protein.
Length = 422
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>AF244972-1|AAM00188.1| 414|Homo sapiens SYT protein protein.
Length = 414
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>AF230662-1|AAF79937.1| 492|Homo sapiens unknown protein.
Length = 492
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 193 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 246
>AB300357-1|BAF56184.1| 457|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 457
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>AB300356-1|BAF56183.1| 488|Homo sapiens fusion protein SYT-SSX2
protein.
Length = 488
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>AB300355-1|BAF56182.1| 457|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 457
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>AB300354-1|BAF56181.1| 488|Homo sapiens fusion protein SYT-SSX1
protein.
Length = 488
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 NFGPRPNM-MNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGN 435
N+GPRPNM M N P YN G Q+ G N GN
Sbjct: 189 NYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGN 242
>AB020631-1|BAA74847.1| 1644|Homo sapiens KIAA0824 protein protein.
Length = 1644
Score = 30.3 bits (65), Expect = 7.8
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 346 NDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKSPGNMQYGN 498
N ND N F P Q P+ NFNG PGN + N
Sbjct: 1219 NQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSN 1269
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,914,267
Number of Sequences: 237096
Number of extensions: 2315260
Number of successful extensions: 4226
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4225
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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