Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30477
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18810.1 68416.m02389 protein kinase family protein contains ... 44 1e-04
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s... 34 0.12
At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident... 32 0.47
At5g14340.1 68418.m01676 myb family transcription factor (MYB40)... 29 2.5
At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam p... 29 4.4
At4g31590.1 68417.m04487 glycosyl transferase family 2 protein s... 29 4.4
At2g24630.1 68415.m02942 glycosyl transferase family 2 protein s... 29 4.4
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 28 5.8
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 28 7.7
At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family pr... 28 7.7
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/80 (35%), Positives = 34/80 (42%)
Frame = +1
Query: 286 PRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNG 465
P P N N + N N+ N N+ N N+ G K N NNG NN NG
Sbjct: 65 PSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNG------NNNNG 118
Query: 466 DKSPGNMQYGNKNDLAVLNN 525
+ + GN GN ND NN
Sbjct: 119 NDNNGNNNNGNNNDNNNQNN 138
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 265 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRN-NFNNGNQP 441
G N G N N N N N ND N N+ + N+ G N N NNGN
Sbjct: 69 GNNNNDGNNGNNNNDNNNNNNGNNN--NDNNNGNNKDNNNNGNNNNGNNNNGNDNNGNNN 126
Query: 442 PKKNNFNGDKSPG 480
NN N +++ G
Sbjct: 127 NGNNNDNNNQNNG 139
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/60 (35%), Positives = 23/60 (38%)
Frame = +1
Query: 295 NMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPPKKNNFNGDKS 474
N N N ND N N N N+GN N+ N NNGN N NG S
Sbjct: 84 NNNNNNGNNNNDNNNGNNKDNN-NNGNNNNGNNNNGNDNNGNNNNGNNNDNNNQNNGGGS 142
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/71 (26%), Positives = 26/71 (36%)
Frame = +1
Query: 265 GGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQFRPRNNFNNGNQPP 444
G N N N N N N+ N+ N+GN N+ G N NN N
Sbjct: 78 GNNNNDNNNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNN-GNDNNGNNNNGNNNDNNNQ 136
Query: 445 KKNNFNGDKSP 477
+ ++SP
Sbjct: 137 NNGGGSNNRSP 147
>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 673
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = -2
Query: 725 NLVRSHIGFQQAITRMFCFFAL*FAIIQRMLNRVWTVRLPRNKFRLLIPIAILV--VVCF 552
++++S I + +F FF L I+ ++ + LP F IP A L ++C+
Sbjct: 445 SIIKSKISVWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMF---IPEAELPLWIICY 501
Query: 551 RPIILVIILLFRTAKS--FLLPYCIFPGDLS 465
PI + ++ + + KS FL+PY +F +S
Sbjct: 502 VPIFISLLNILPSPKSFPFLVPYLLFENTMS 532
>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
identical to SP|Q8GYN5 RPM1-interacting protein 4
{Arabidopsis thaliana}
Length = 211
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +1
Query: 223 TIR*NSIH*RSPDFGGPKNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFGGPKQ 402
T+R + H RS + K FG N+ R N Y+ K+ ++N + G +
Sbjct: 69 TVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQNNSYDNKSPLHKNSYDGTGK 128
Query: 403 FRPRNNFNNGNQPPKK 450
RP+ ++ P+K
Sbjct: 129 SRPKPTNLRADESPEK 144
>At5g14340.1 68418.m01676 myb family transcription factor (MYB40)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 263
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 283 GPRPNMMNKNFRPRNDFNEVKNDYNTKNDGNQNDFG-GPKQFRPRNNFNNGNQPPKKNNF 459
G R + + +F R D NE+KN +NTK G P +P N+ + P
Sbjct: 86 GNRWSKIASHFSGRTD-NEIKNHWNTKIKKKMKHLGLDPATHKPMNDITHQTDP------ 138
Query: 460 NGDKSP 477
N DK P
Sbjct: 139 NQDKKP 144
>At5g65070.1 68418.m08185 MADS-box protein (MAF4) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); contains Pfam
profile PF01486: K-box region
Length = 200
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 413 EIILTMVTNHQRKTTLMETNHQEICNMAIKM 505
E+++ +V HQ K L+ +Q + N IKM
Sbjct: 137 ELMMELVKTHQEKEKLLREENQSLTNQLIKM 167
>At4g31590.1 68417.m04487 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 692
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = -2
Query: 725 NLVRSHIGFQQAITRMFCFFAL*FAIIQRMLNRVWTVRLPRNKFRLLIPIAILVV--VCF 552
+++ S I + + FF L I+ ++ + LP F +P A L V +C+
Sbjct: 473 SILTSKIAIWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMF---VPEAELPVWVICY 529
Query: 551 RPIILVIILLFRTAKS--FLLPYCIFPGDLS 465
P+ + + L + KS F++PY +F +S
Sbjct: 530 IPVFMSFLNLLPSPKSFPFIVPYLLFENTMS 560
>At2g24630.1 68415.m02942 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535
Length = 690
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = -2
Query: 725 NLVRSHIGFQQAITRMFCFFAL*FAIIQRMLNRVWTVRLPRNKFRLLIPIAILV--VVCF 552
+++ S I + + FF L I+ ++ V LP F +P A L V+C+
Sbjct: 473 SILTSKIAMWKKANLILLFFLLRKLILPFYSFTLFCVILPITMF---VPEAELPIWVICY 529
Query: 551 RPIILVIILLFRTAKS--FLLPYCIFPGDLS 465
PI + ++ + KS F++PY +F +S
Sbjct: 530 VPIFMSLLNILPAPKSFPFIVPYLLFENTMS 560
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +3
Query: 534 NKNYGPKTYNNQNCYGNEQPEFIPRQSYSPNSVQHSLNDRKLQSK 668
N K N N YG E P + YS N + ++D + K
Sbjct: 206 NNEDNKKNVYNSNAYGTELERETPYKGYSHNLERQGMSDTRFMEK 250
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 513 GPKQQNYNKNYGPKTYNNQNCYGNEQPEFIPRQS 614
G Q ++ + P + NN YG P +P QS
Sbjct: 406 GSMQTDHGGSNTPSSQNNSTSYGTPSPSVLPSQS 439
>At1g23180.1 68414.m02896 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 834
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 274 KNFGPRPNMMNKNFRPRNDFNEVKNDYNTKNDG 372
++F P P ++ N R R+ F+E+ + ++ N G
Sbjct: 46 RSFSPFPVLIQSNRRLRHGFSELNSSFDRSNSG 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,518
Number of Sequences: 28952
Number of extensions: 356571
Number of successful extensions: 1068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -